{"id":"https://openalex.org/W2045298789","doi":"https://doi.org/10.1145/2811163.2811170","title":"Prognostic Factor Analysis for Breast Cancer Using Gene Expression Profiles","display_name":"Prognostic Factor Analysis for Breast Cancer Using Gene Expression Profiles","publication_year":2015,"publication_date":"2015-10-22","ids":{"openalex":"https://openalex.org/W2045298789","doi":"https://doi.org/10.1145/2811163.2811170","mag":"2045298789"},"language":"en","primary_location":{"id":"doi:10.1145/2811163.2811170","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2811163.2811170","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045019959","display_name":"Soobok Joe","orcid":"https://orcid.org/0000-0003-2546-527X"},"institutions":[{"id":"https://openalex.org/I39534123","display_name":"Gwangju Institute of Science and Technology","ror":"https://ror.org/024kbgz78","country_code":"KR","type":"education","lineage":["https://openalex.org/I39534123"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Soobok Joe","raw_affiliation_strings":["Gwangju Institute of Science and Technology, Gwangju, South Korea","[Gwangju Institute of Science and Technology, Gwangju, South Korea]"],"affiliations":[{"raw_affiliation_string":"Gwangju Institute of Science and Technology, Gwangju, South Korea","institution_ids":["https://openalex.org/I39534123"]},{"raw_affiliation_string":"[Gwangju Institute of Science and Technology, Gwangju, South Korea]","institution_ids":["https://openalex.org/I39534123"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043581759","display_name":"Hojung Nam","orcid":"https://orcid.org/0000-0002-5109-9114"},"institutions":[{"id":"https://openalex.org/I39534123","display_name":"Gwangju Institute of Science and Technology","ror":"https://ror.org/024kbgz78","country_code":"KR","type":"education","lineage":["https://openalex.org/I39534123"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hojung Nam","raw_affiliation_strings":["Gwangju Institute of Science and Technology, Gwangju, South Korea","[Gwangju Institute of Science and Technology, Gwangju, South Korea]"],"affiliations":[{"raw_affiliation_string":"Gwangju Institute of Science and Technology, Gwangju, South Korea","institution_ids":["https://openalex.org/I39534123"]},{"raw_affiliation_string":"[Gwangju Institute of Science and Technology, Gwangju, South Korea]","institution_ids":["https://openalex.org/I39534123"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5045019959"],"corresponding_institution_ids":["https://openalex.org/I39534123"],"apc_list":null,"apc_paid":null,"fwci":0.4376,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.64608601,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"16","last_page":"16"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9632999897003174,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.8191860318183899},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5697514414787292},{"id":"https://openalex.org/keywords/survival-analysis","display_name":"Survival analysis","score":0.5650706887245178},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.5476795434951782},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5381326079368591},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5276309847831726},{"id":"https://openalex.org/keywords/log-rank-test","display_name":"Log-rank test","score":0.4829660952091217},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.4728807806968689},{"id":"https://openalex.org/keywords/proportional-hazards-model","display_name":"Proportional hazards model","score":0.42941582202911377},{"id":"https://openalex.org/keywords/survival-rate","display_name":"Survival rate","score":0.4287642538547516},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.406801700592041},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.39416590332984924},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3273240327835083},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3125154972076416},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18659794330596924}],"concepts":[{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.8191860318183899},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5697514414787292},{"id":"https://openalex.org/C10515644","wikidata":"https://www.wikidata.org/wiki/Q543310","display_name":"Survival analysis","level":2,"score":0.5650706887245178},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.5476795434951782},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5381326079368591},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5276309847831726},{"id":"https://openalex.org/C66339696","wikidata":"https://www.wikidata.org/wiki/Q6089397","display_name":"Log-rank test","level":3,"score":0.4829660952091217},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.4728807806968689},{"id":"https://openalex.org/C50382708","wikidata":"https://www.wikidata.org/wiki/Q223218","display_name":"Proportional hazards model","level":2,"score":0.42941582202911377},{"id":"https://openalex.org/C2776283816","wikidata":"https://www.wikidata.org/wiki/Q332823","display_name":"Survival rate","level":2,"score":0.4287642538547516},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.406801700592041},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.39416590332984924},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3273240327835083},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3125154972076416},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18659794330596924}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2811163.2811170","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2811163.2811170","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/1","score":0.4399999976158142,"display_name":"No poverty"}],"awards":[{"id":"https://openalex.org/G2214555067","display_name":null,"funder_award_id":"NRF-2014M3A9C4066449","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G8852134443","display_name":null,"funder_award_id":"HR14C0005","funder_id":"https://openalex.org/F4320322107","funder_display_name":"Korea Health Industry Development Institute"}],"funders":[{"id":"https://openalex.org/F4320321317","display_name":"Gwangju Institute of Science and Technology","ror":"https://ror.org/024kbgz78"},{"id":"https://openalex.org/F4320322107","display_name":"Korea Health Industry Development Institute","ror":"https://ror.org/00fdzyk40"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1607267312","https://openalex.org/W1815740577","https://openalex.org/W1956783319","https://openalex.org/W1964969316","https://openalex.org/W1980503920","https://openalex.org/W1992840397","https://openalex.org/W1993217417","https://openalex.org/W2005895632","https://openalex.org/W2020112232","https://openalex.org/W2030915385","https://openalex.org/W2030955639","https://openalex.org/W2033199493","https://openalex.org/W2036452381","https://openalex.org/W2071707804","https://openalex.org/W2095595090","https://openalex.org/W2105503267","https://openalex.org/W2105882193","https://openalex.org/W2116012295","https://openalex.org/W2119145839","https://openalex.org/W2123293204","https://openalex.org/W2124006755","https://openalex.org/W2128985829","https://openalex.org/W2131277831","https://openalex.org/W2133465414","https://openalex.org/W2156273110","https://openalex.org/W2164928285"],"related_works":["https://openalex.org/W3136232645","https://openalex.org/W2006470775","https://openalex.org/W1554732404","https://openalex.org/W4225121065","https://openalex.org/W4389952016","https://openalex.org/W1968524627","https://openalex.org/W2214928730","https://openalex.org/W3204293659","https://openalex.org/W2898832449","https://openalex.org/W2383837988"],"abstract_inverted_index":{"The":[0],"survival":[1,58,74,104,158,212],"of":[2,25,34,47,86,146,191,208,211],"patients":[3,87],"with":[4,72,102,172,188],"breast":[5,54,192,222],"cancer":[6,170,177],"is":[7],"highly":[8],"sporadic,":[9],"from":[10],"a":[11,31,131,198],"few":[12],"months":[13],"to":[14,49,67,116],"more":[15],"than":[16,186],"15":[17],"years.":[18],"Recently,":[19],"the":[20,97,144,156,209],"large-scale":[21,43],"gene":[22,44,93,111,122,135,199],"expression":[23,45,94,150,200],"profiling":[24],"tumors":[26,48],"has":[27],"been":[28],"used":[29,42,62],"as":[30],"promising":[32],"means":[33],"predicting":[35],"prognosis":[36],"factors.":[37],"In":[38,165,194],"this":[39],"study,":[40],"we":[41,113,167,202],"datasets":[46],"identify":[50],"prognostic":[51,134,219],"factors":[52,220],"in":[53,160,221],"cancer.":[55,193,223],"We":[56],"conducted":[57],"log-rank":[59,79],"tests":[60],"and":[61,91,127,148,180],"an":[63],"unsupervised":[64],"clustering":[65],"method":[66,207],"find":[68,117],"individual":[69],"genes":[70,98,115],"associated":[71,101],"worse":[73,157],"rates.":[75],"For":[76],"each":[77],"gene,":[78],"test":[80],"was":[81],"performed":[82],"between":[83],"two":[84],"groups":[85],"who":[88],"had":[89,183],"high":[90,147],"low":[92,149],"levels.":[95],"After":[96],"which":[99],"were":[100,105,137],"poor":[103,173],"separated":[106],"into":[107],"high-":[108],"or":[109,119],"low-expressed":[110],"sets,":[112],"clustered":[114],"co-expressed":[118],"reciprocally":[120],"expressed":[121],"sets":[123,136],"through":[124],"maximal":[125],"clique":[126],"bi-clique":[128],"algorithms.":[129],"As":[130],"result,":[132],"four":[133,153],"constructed":[138],"among":[139],"24,924":[140],"genes.":[141],"Based":[142],"on":[143,197],"ratio":[145],"levels,":[151],"our":[152,205],"scores":[154,185],"predicted":[155],"rates":[159],"three":[161],"independent":[162],"data":[163],"sets.":[164],"addition,":[166],"found":[168],"that":[169,204],"patient":[171],"prognosis,":[174],"i.e.,":[175],"triple-negative":[176],"types,":[178],"HER2-enriched,":[179],"high-grade":[181],"patients,":[182],"higher":[184],"those":[187],"other":[189],"types":[190],"conclusion,":[195],"based":[196],"analysis,":[201],"suggest":[203],"well-defined":[206],"prediction":[210],"outcome":[213],"may":[214],"be":[215],"useful":[216],"for":[217],"developing":[218]},"counts_by_year":[{"year":2018,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
