{"id":"https://openalex.org/W1971198173","doi":"https://doi.org/10.1145/2808719.2816838","title":"fMRI image registration with AFNI's 3dQwarp","display_name":"fMRI image registration with AFNI's 3dQwarp","publication_year":2015,"publication_date":"2015-09-09","ids":{"openalex":"https://openalex.org/W1971198173","doi":"https://doi.org/10.1145/2808719.2816838","mag":"1971198173"},"language":"en","primary_location":{"id":"doi:10.1145/2808719.2816838","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2808719.2816838","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051882926","display_name":"Junqi Yin","orcid":"https://orcid.org/0000-0003-3843-5520"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Junqi Yin","raw_affiliation_strings":["University of Tennessee, Oak Ridge, TN"],"affiliations":[{"raw_affiliation_string":"University of Tennessee, Oak Ridge, TN","institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027034335","display_name":"R. Glenn Brook","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Glenn Brook","raw_affiliation_strings":["University of Tennessee, Oak Ridge, TN"],"affiliations":[{"raw_affiliation_string":"University of Tennessee, Oak Ridge, TN","institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081673222","display_name":"Lonnie D. Crosby","orcid":"https://orcid.org/0000-0003-4283-4137"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]},{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lonnie Crosby","raw_affiliation_strings":["University of Tennessee, Oak Ridge, TN"],"affiliations":[{"raw_affiliation_string":"University of Tennessee, Oak Ridge, TN","institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088139692","display_name":"Mitchel D. Horton","orcid":null},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]},{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mitchel Horton","raw_affiliation_strings":["University of Tennessee, Oak Ridge, TN"],"affiliations":[{"raw_affiliation_string":"University of Tennessee, Oak Ridge, TN","institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047360843","display_name":"Chad Burdyshaw","orcid":null},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]},{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chad Burdyshaw","raw_affiliation_strings":["University of Tennessee, Oak Ridge, TN"],"affiliations":[{"raw_affiliation_string":"University of Tennessee, Oak Ridge, TN","institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048474874","display_name":"Frank M. Skidmore","orcid":null},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Frank Skidmore","raw_affiliation_strings":["University of Alabama, Birmingham, AL","University of Alabama (Birmingham, AL)"],"affiliations":[{"raw_affiliation_string":"University of Alabama, Birmingham, AL","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"University of Alabama (Birmingham, AL)","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108651331","display_name":"Jon Marstrander","orcid":null},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jon Marstrander","raw_affiliation_strings":["University of Alabama, Birmingham, AL","University of Alabama (Birmingham, AL)"],"affiliations":[{"raw_affiliation_string":"University of Alabama, Birmingham, AL","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"University of Alabama (Birmingham, AL)","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000081835","display_name":"Thomas Anthony","orcid":"https://orcid.org/0000-0002-4443-5466"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas Anthony","raw_affiliation_strings":["University of Alabama, Birmingham, AL","University of Alabama (Birmingham, AL)"],"affiliations":[{"raw_affiliation_string":"University of Alabama, Birmingham, AL","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"University of Alabama (Birmingham, AL)","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100389402","display_name":"Yuliang Liu","orcid":"https://orcid.org/0000-0003-4308-9458"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuliang Liu","raw_affiliation_strings":["University of Alabama, Birmingham, AL","University of Alabama (Birmingham, AL)"],"affiliations":[{"raw_affiliation_string":"University of Alabama, Birmingham, AL","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"University of Alabama (Birmingham, AL)","institution_ids":["https://openalex.org/I32389192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5051882926"],"corresponding_institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I75027704"],"apc_list":null,"apc_paid":null,"fwci":0.2714,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.6210799,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"559","last_page":"560"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10919","display_name":"Neurological disorders and treatments","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2728","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/image-registration","display_name":"Image registration","score":0.6553452610969543},{"id":"https://openalex.org/keywords/spatial-normalization","display_name":"Spatial normalization","score":0.6417230367660522},{"id":"https://openalex.org/keywords/neuroimaging","display_name":"Neuroimaging","score":0.6312218308448792},{"id":"https://openalex.org/keywords/diffusion-mri","display_name":"Diffusion MRI","score":0.5960878133773804},{"id":"https://openalex.org/keywords/fractional-anisotropy","display_name":"Fractional anisotropy","score":0.5713927149772644},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5248651504516602},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5200828909873962},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.49449488520622253},{"id":"https://openalex.org/keywords/human-brain","display_name":"Human brain","score":0.48823311924934387},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4750218987464905},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.43171966075897217},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.4188046157360077},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.39306169748306274},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.3249948024749756},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.32047605514526367},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.2639370560646057},{"id":"https://openalex.org/keywords/magnetic-resonance-imaging","display_name":"Magnetic resonance imaging","score":0.2604082226753235},{"id":"https://openalex.org/keywords/voxel","display_name":"Voxel","score":0.238053560256958},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.12902209162712097}],"concepts":[{"id":"https://openalex.org/C166704113","wikidata":"https://www.wikidata.org/wiki/Q861092","display_name":"Image registration","level":3,"score":0.6553452610969543},{"id":"https://openalex.org/C116580362","wikidata":"https://www.wikidata.org/wiki/Q3878457","display_name":"Spatial normalization","level":3,"score":0.6417230367660522},{"id":"https://openalex.org/C58693492","wikidata":"https://www.wikidata.org/wiki/Q551875","display_name":"Neuroimaging","level":2,"score":0.6312218308448792},{"id":"https://openalex.org/C149550507","wikidata":"https://www.wikidata.org/wiki/Q899360","display_name":"Diffusion MRI","level":3,"score":0.5960878133773804},{"id":"https://openalex.org/C89916169","wikidata":"https://www.wikidata.org/wiki/Q17014600","display_name":"Fractional anisotropy","level":4,"score":0.5713927149772644},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5248651504516602},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5200828909873962},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.49449488520622253},{"id":"https://openalex.org/C2777670902","wikidata":"https://www.wikidata.org/wiki/Q492038","display_name":"Human brain","level":2,"score":0.48823311924934387},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4750218987464905},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.43171966075897217},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.4188046157360077},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.39306169748306274},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.3249948024749756},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.32047605514526367},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.2639370560646057},{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.2604082226753235},{"id":"https://openalex.org/C54170458","wikidata":"https://www.wikidata.org/wiki/Q663554","display_name":"Voxel","level":2,"score":0.238053560256958},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.12902209162712097},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2808719.2816838","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2808719.2816838","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W1980742191","https://openalex.org/W1982303937","https://openalex.org/W2011948084","https://openalex.org/W2011961239","https://openalex.org/W2039570780","https://openalex.org/W2059159151"],"related_works":["https://openalex.org/W3031573373","https://openalex.org/W2017539237","https://openalex.org/W2607776059","https://openalex.org/W2802561361","https://openalex.org/W2487470953","https://openalex.org/W2415162139","https://openalex.org/W4205593364","https://openalex.org/W2945339633","https://openalex.org/W2080220338","https://openalex.org/W3118966479"],"abstract_inverted_index":{"In":[0,130],"the":[1,65,71,93,100,109,131,178,200,204,216],"study":[2],"of":[3,13,57,92,96,115,145,159,163,174,177,206,221,229],"Parkinson's":[4],"disease":[5],"(PD),":[6],"substantial":[7],"research":[8],"has":[9,76],"shown":[10],"a":[11,22,85],"variety":[12],"findings":[14,82],"within":[15,99],"brain":[16,34,47,105,140,147],"MR":[17,123],"images":[18,124],"that":[19,154],"differ":[20],"on":[21],"group-wise":[23],"level":[24,87],"between":[25,121],"individuals":[26],"with":[27],"PD":[28,169],"and":[29,36,46,113,227],"healthy":[30],"adults,":[31],"including":[32],"resting":[33],"activity":[35],"blood":[37],"flow":[38],"[1,":[39],"2],":[40],"diffusion":[41],"tensor":[42],"fractional":[43],"anisotropy":[44],"[3],":[45],"iron":[48],"deposition":[49],"[4,":[50],"5].":[51],"Despite":[52],"these":[53,58,116],"promising":[54],"findings,":[55],"none":[56],"putative":[59],"biomarkers":[60],"have":[61],"become":[62],"utilized":[63],"in":[64,134,203,219],"field.":[66],"We":[67],"believe":[68],"this":[69,160],"is":[70,152],"case":[72],"principally":[73],"because":[74,91],"it":[75],"been":[77],"very":[78],"difficulty":[79],"to":[80,88,155],"register":[81],"visible":[83],"at":[84],"group":[86],"individual":[89],"brains":[90],"vast":[94,127],"amount":[95,162],"inter-subject":[97],"variability":[98],"human":[101],"population.":[102],"While":[103],"specific":[104],"structures":[106,117],"are":[107,188],"common,":[108],"precise":[110],"location,":[111],"distribution,":[112],"size":[114],"can":[118],"vary":[119],"dramatically":[120],"individuals.":[122],"essentially":[125],"represent":[126],"unstructured":[128],"datasets.":[129],"United":[132],"States":[133],"2011,":[135],"over":[136],"8.7":[137],"million":[138],"MRI":[139],"scans":[141],"sessions":[142],"(each":[143],"comprised":[144],"multiple":[146],"imaging":[148,164],"sequences)":[149],"occurred.":[150],"It":[151],"clear":[153],"make":[156],"practical":[157],"use":[158],"massive":[161],"data,":[165],"not":[166],"only":[167],"for":[168,172,193],"but":[170],"also":[171],"analysis":[173],"other":[175],"conditions":[176],"brain,":[179],"high":[180],"performance":[181],"computing":[182],"solutions":[183],"will":[184],"be":[185],"required.":[186],"There":[187],"several":[189],"software":[190],"packages":[191],"available":[192],"image":[194,198],"registration.":[195],"For":[196],"non-linear":[197],"registration,":[199],"3dQwarp":[201],"code":[202],"Analysis":[205],"Functional":[207],"Neuroimaging":[208],"(AFNI)":[209],"package":[210],"[6]":[211],"designed":[212],"by":[213],"NIH":[214],"provides":[215],"best":[217],"result":[218],"terms":[220],"normalized":[222],"cross":[223],"correlation,":[224],"mutual":[225],"information":[226],"sum":[228],"squared":[230],"differences":[231],"[7].":[232]},"counts_by_year":[{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-12T07:58:50.170612","created_date":"2025-10-10T00:00:00"}
