{"id":"https://openalex.org/W2076305282","doi":"https://doi.org/10.1145/2808719.2811435","title":"HPC-BLAST","display_name":"HPC-BLAST","publication_year":2015,"publication_date":"2015-09-09","ids":{"openalex":"https://openalex.org/W2076305282","doi":"https://doi.org/10.1145/2808719.2811435","mag":"2076305282"},"language":"en","primary_location":{"id":"doi:10.1145/2808719.2811435","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2808719.2811435","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008632119","display_name":"Shane E. Sawyer","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Shane E. Sawyer","raw_affiliation_strings":["Oak Ridge National Laboratory, Oak Ridge, TN","Oak Ridge National Laboratory, Oak Ridge, TN#TAB#"],"affiliations":[{"raw_affiliation_string":"Oak Ridge National Laboratory, Oak Ridge, TN","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Oak Ridge National Laboratory, Oak Ridge, TN#TAB#","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008551250","display_name":"Bhanu Rekepalli","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bhanu Rekepalli","raw_affiliation_strings":["BioTeam Inc., Middleton, MA"],"affiliations":[{"raw_affiliation_string":"BioTeam Inc., Middleton, MA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088139692","display_name":"Mitchel D. Horton","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mitchel D. Horton","raw_affiliation_strings":["Oak Ridge National Laboratory, Oak Ridge, TN","Oak Ridge National Laboratory, Oak Ridge, TN#TAB#"],"affiliations":[{"raw_affiliation_string":"Oak Ridge National Laboratory, Oak Ridge, TN","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Oak Ridge National Laboratory, Oak Ridge, TN#TAB#","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027034335","display_name":"R. Glenn Brook","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Glenn Brook","raw_affiliation_strings":["Oak Ridge National Laboratory, Oak Ridge, TN","Oak Ridge National Laboratory, Oak Ridge, TN#TAB#"],"affiliations":[{"raw_affiliation_string":"Oak Ridge National Laboratory, Oak Ridge, TN","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Oak Ridge National Laboratory, Oak Ridge, TN#TAB#","institution_ids":["https://openalex.org/I1289243028"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5008632119"],"corresponding_institution_ids":["https://openalex.org/I1289243028"],"apc_list":null,"apc_paid":null,"fwci":0.5834,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.68064395,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"512","last_page":"513"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9829000234603882,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5374309420585632}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5374309420585632}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2808719.2811435","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2808719.2811435","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7356723120","display_name":null,"funder_award_id":"Intel Parallel Computing Center","funder_id":"https://openalex.org/F4320307102","funder_display_name":"Intel Corporation"}],"funders":[{"id":"https://openalex.org/F4320307102","display_name":"Intel Corporation","ror":"https://ror.org/01ek73717"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":4,"referenced_works":["https://openalex.org/W2055043387","https://openalex.org/W2158714788","https://openalex.org/W2169981472","https://openalex.org/W2784619191"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2093578348","https://openalex.org/W2376932109","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W3004735627","https://openalex.org/W2130043461"],"abstract_inverted_index":{"The":[0],"near":[1],"exponential":[2],"growth":[3],"in":[4,27,43,70],"sequence":[5,28],"data":[6],"available":[7],"to":[8,20,67,89],"bioinformaticists,":[9],"and":[10,78],"the":[11,32,44,47,55],"emergence":[12],"of":[13,16,46,57,93],"new":[14],"fields":[15],"biological":[17],"research,":[18],"continue":[19],"fuel":[21],"an":[22],"incessant":[23],"need":[24],"for":[25],"increases":[26],"alignment":[29],"performance.":[30],"Concurrently,":[31],"High":[33],"Performance":[34],"Computing":[35],"(HPC)":[36],"world":[37],"has":[38],"seen":[39],"a":[40,90],"steady":[41],"increase":[42],"use":[45,61],"Intel":[48],"Xeon":[49],"Phi.":[50],"This":[51],"is":[52],"depicted":[53],"by":[54],"concentration":[56],"TOP500":[58],"machines":[59],"that":[60],"Phi":[62],"accelerators,":[63],"from":[64],"November":[65,68],"2012":[66],"2014,":[69],"six":[71],"month":[72],"intervals:":[73],"0.40%,":[74],"1.60%,":[75],"1.80%,":[76],"2.80%,":[77],"3.4%.":[79],"Today,":[80],"more":[81],"than":[82],"ever":[83],"before,":[84],"bioinformatics":[85],"researchers":[86],"have":[87],"access":[88],"wide":[91],"variety":[92],"HPC":[94],"architectures.":[95]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}