{"id":"https://openalex.org/W1968411827","doi":"https://doi.org/10.1145/2808719.2811421","title":"The systems toxicology challenge","display_name":"The systems toxicology challenge","publication_year":2015,"publication_date":"2015-09-09","ids":{"openalex":"https://openalex.org/W1968411827","doi":"https://doi.org/10.1145/2808719.2811421","mag":"1968411827"},"language":"en","primary_location":{"id":"doi:10.1145/2808719.2811421","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2808719.2811421","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032018257","display_name":"Nikolai V. Ivanov","orcid":"https://orcid.org/0000-0002-2052-4333"},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Nikolai V. Ivanov","raw_affiliation_strings":["Philip Morris International R&amp;D, Neuch\u00e2tel Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philip Morris International R&amp;D, Neuch\u00e2tel Switzerland","institution_ids":["https://openalex.org/I2800621710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009882702","display_name":"Carine Poussin","orcid":"https://orcid.org/0000-0001-9729-6853"},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Carine Poussin","raw_affiliation_strings":["Philip Morris International R&amp;D, Neuch\u00e2tel Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philip Morris International R&amp;D, Neuch\u00e2tel Switzerland","institution_ids":["https://openalex.org/I2800621710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077640275","display_name":"St\u00e9phanie Bou\u00e9","orcid":"https://orcid.org/0000-0003-0680-4168"},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"St\u00e9phanie Bou\u00e9","raw_affiliation_strings":["Philip Morris International R&amp;D, Neuch\u00e2tel Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philip Morris International R&amp;D, Neuch\u00e2tel Switzerland","institution_ids":["https://openalex.org/I2800621710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058143169","display_name":"Florian Martin","orcid":"https://orcid.org/0000-0002-5968-5484"},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Florian Martin","raw_affiliation_strings":["Philip Morris International R&amp;D, Neuch\u00e2tel Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philip Morris International R&amp;D, Neuch\u00e2tel Switzerland","institution_ids":["https://openalex.org/I2800621710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109389668","display_name":"Alain Sewer","orcid":null},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Alain Sewer","raw_affiliation_strings":["Philip Morris International R&amp;D, Neuch\u00e2tel Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philip Morris International R&amp;D, Neuch\u00e2tel Switzerland","institution_ids":["https://openalex.org/I2800621710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045793906","display_name":"Bjoern Titz","orcid":"https://orcid.org/0000-0003-4414-4105"},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Bjoern Titz","raw_affiliation_strings":["Philip Morris International R&amp;D, Neuch\u00e2tel Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philip Morris International R&amp;D, Neuch\u00e2tel Switzerland","institution_ids":["https://openalex.org/I2800621710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012278670","display_name":"Manuel C. Peitsch","orcid":"https://orcid.org/0000-0001-5324-359X"},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Manuel C. Peitsch","raw_affiliation_strings":["Philip Morris International R&amp;D, Neuch\u00e2tel Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philip Morris International R&amp;D, Neuch\u00e2tel Switzerland","institution_ids":["https://openalex.org/I2800621710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087038430","display_name":"Julia Hoeng","orcid":"https://orcid.org/0000-0001-5371-6801"},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Julia Hoeng","raw_affiliation_strings":["Philip Morris International R&amp;D, Neuch\u00e2tel Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philip Morris International R&amp;D, Neuch\u00e2tel Switzerland","institution_ids":["https://openalex.org/I2800621710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.05846154,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"487","last_page":"487"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9817000031471252,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9817000031471252,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12281","display_name":"Animal testing and alternatives","score":0.9380000233650208,"subfield":{"id":"https://openalex.org/subfields/3404","display_name":"Small Animals"},"field":{"id":"https://openalex.org/fields/34","display_name":"Veterinary"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9122999906539917,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6942316293716431},{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.6865237951278687},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6730936765670776},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6173943281173706},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.5820983052253723},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5758903622627258},{"id":"https://openalex.org/keywords/scope","display_name":"Scope (computer science)","score":0.5558562278747559},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44946154952049255},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.43230631947517395},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.43020907044410706},{"id":"https://openalex.org/keywords/risk-analysis","display_name":"Risk analysis (engineering)","score":0.33289873600006104},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3245815336704254},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.25699859857559204},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22570201754570007},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1948642134666443},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.09811213612556458}],"concepts":[{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6942316293716431},{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.6865237951278687},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6730936765670776},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6173943281173706},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.5820983052253723},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5758903622627258},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.5558562278747559},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44946154952049255},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.43230631947517395},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.43020907044410706},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.33289873600006104},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3245815336704254},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.25699859857559204},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22570201754570007},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1948642134666443},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.09811213612556458},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2808719.2811421","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2808719.2811421","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.44999998807907104,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320315260","display_name":"Philip Morris International","ror":"https://ror.org/005rxfw29"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":1,"referenced_works":["https://openalex.org/W2155886619"],"related_works":["https://openalex.org/W2905433371","https://openalex.org/W2888392564","https://openalex.org/W4310278675","https://openalex.org/W4388422664","https://openalex.org/W4390569940","https://openalex.org/W4361193272","https://openalex.org/W2963326959","https://openalex.org/W4388685194","https://openalex.org/W4312407344","https://openalex.org/W4206785888"],"abstract_inverted_index":{"Risk":[0],"assessment":[1],"in":[2,39,85,95,171,207,240],"the":[3,11,58,89,103,123,131,152,161,200,208,221,232,241],"context":[4],"of":[5,15,17,47,53,62,77,91,125,133,154,157,166,202,210,220,243],"21st":[6],"century":[7],"toxicology":[8],"relies":[9],"on":[10,111],"elucidation":[12],"and":[13,44,60,68,71,93,113,130,159,225,235],"understanding":[14],"mechanisms":[16,168],"toxicity.":[18],"For":[19,197],"that":[20,117],"purpose,":[21],"datasets":[22],"generated":[23,38],"by":[24,163],"high-throughput":[25],"technologies":[26],"(e.g.,":[27],"high-throughput/content":[28],"screening)":[29],"combined":[30],"with":[31,188,231],"various":[32],"omics":[33,164],"data":[34,65,165,191],"types":[35],"are":[36,176],"now":[37],"vitro":[40,172],"to":[41,102,178,193,216],"test":[42],"large":[43],"diverse":[45],"set":[46],"chemicals":[48],"(e.g.":[49],"ToxCast).":[50],"The":[51,74,223],"development":[52,209],"relevant":[54],"computational":[55,211],"approaches":[56,212],"for":[57,82,151],"analysis":[59],"integration":[61,201],"these":[63],"big":[64],"remains":[66],"challenging":[67],"requires":[69],"qualitative":[70],"quantitative":[72],"evaluation.":[73],"current":[75],"scope":[76],"sbv":[78,140],"IMPROVER":[79,141],"(Industrial":[80],"Methodology":[81],"Process":[83],"Verification":[84],"Research;":[86],"http://sbvimprover.com)":[87],"is":[88],"verification":[90],"methods":[92,112],"concepts":[94],"systems":[96,244],"biology":[97],"research":[98],"via":[99],"challenges":[100,107],"opened":[101],"scientific":[104,233],"community.":[105],"Previous":[106],"brought":[108],"new":[109,139,238],"insights":[110],"their":[114],"associated":[115],"results":[116,224],"address":[118],"questions":[119],"about":[120],"diagnostic":[121],"signatures,":[122],"translatability":[124],"biological":[126,134,205,218],"responses/processes":[127],"across":[128],"species,":[129],"relevance":[132],"causal":[135],"network":[136],"models.":[137],"A":[138],"challenge":[142],"will":[143,185,228,236],"be":[144,186,214,229],"introduced":[145],"aiming":[146],"at":[147],"evaluating":[148],"(i)":[149],"methodologies":[150],"identification":[153],"specific":[155],"biomarkers":[156],"exposure":[158],"(ii)":[160],"predictability":[162],"toxicity":[167],"when":[169],"cells/tissues":[170],"or":[173,182],"whole":[174],"organisms":[175],"exposed":[177],"individual":[179],"chemical":[180],"molecules":[181],"mixtures.":[183],"Participants":[184],"provided":[187],"high":[189],"quality":[190],"sets":[192],"develop":[194],"predictive":[195],"models/classifiers.":[196],"this":[198],"challenge,":[199],"a":[203],"priori":[204],"knowledge":[206],"may":[213],"required":[215],"enable":[217],"interpretability/understanding":[219],"predictions.":[222],"post-challenge":[226],"analyses":[227],"shared":[230],"community,":[234],"open":[237],"avenues":[239],"field":[242],"toxicology.":[245]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
