{"id":"https://openalex.org/W2017077771","doi":"https://doi.org/10.1145/2808719.2808756","title":"Compare local pocket and global protein structure models by small structure patterns","display_name":"Compare local pocket and global protein structure models by small structure patterns","publication_year":2015,"publication_date":"2015-09-09","ids":{"openalex":"https://openalex.org/W2017077771","doi":"https://doi.org/10.1145/2808719.2808756","mag":"2017077771"},"language":"en","primary_location":{"id":"doi:10.1145/2808719.2808756","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2808719.2808756","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101906222","display_name":"Xuefeng Cui","orcid":"https://orcid.org/0000-0002-8816-3482"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Xuefeng Cui","raw_affiliation_strings":["King Abdullah University of Science and Technology, Thuwal, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology, Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005997934","display_name":"Hiroyuki Kuwahara","orcid":"https://orcid.org/0000-0001-5333-6729"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Hiroyuki Kuwahara","raw_affiliation_strings":["King Abdullah University of Science and Technology, Thuwal, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology, Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083428910","display_name":"Shuai Cheng Li","orcid":"https://orcid.org/0000-0001-6246-6349"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Shuai Cheng Li","raw_affiliation_strings":["City University of Hong Kong, Kowloon, Hong Kong","City University of Hong Kong , Kowloon, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"City University of Hong Kong, Kowloon, Hong Kong","institution_ids":["https://openalex.org/I168719708"]},{"raw_affiliation_string":"City University of Hong Kong , Kowloon, Hong Kong","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100618900","display_name":"Xin Gao","orcid":"https://orcid.org/0000-0002-7108-3574"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Xin Gao","raw_affiliation_strings":["King Abdullah University of Science and Technology, Thuwal, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology, Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4518,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.65647404,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"355","last_page":"365"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/casp","display_name":"CASP","score":0.978184163570404},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.805649995803833},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5452450513839722},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.48888295888900757},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.45349276065826416},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.39379313588142395},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3422524631023407},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08988243341445923}],"concepts":[{"id":"https://openalex.org/C66153294","wikidata":"https://www.wikidata.org/wiki/Q899291","display_name":"CASP","level":4,"score":0.978184163570404},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.805649995803833},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5452450513839722},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.48888295888900757},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.45349276065826416},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.39379313588142395},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3422524631023407},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08988243341445923},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/2808719.2808756","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2808719.2808756","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/579601","is_oa":false,"landing_page_url":"http://hdl.handle.net/10754/579601","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.4399999976158142,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1572077722","https://openalex.org/W1776991207","https://openalex.org/W1978113501","https://openalex.org/W1979414133","https://openalex.org/W1983815352","https://openalex.org/W1989777815","https://openalex.org/W1995903245","https://openalex.org/W2003788979","https://openalex.org/W2015147525","https://openalex.org/W2053012672","https://openalex.org/W2066795144","https://openalex.org/W2084938591","https://openalex.org/W2085805928","https://openalex.org/W2090617952","https://openalex.org/W2100856169","https://openalex.org/W2102245393","https://openalex.org/W2103150692","https://openalex.org/W2105902442","https://openalex.org/W2110186020","https://openalex.org/W2110483430","https://openalex.org/W2113267464","https://openalex.org/W2115595474","https://openalex.org/W2119550029","https://openalex.org/W2122576346","https://openalex.org/W2127868702","https://openalex.org/W2128402268","https://openalex.org/W2130479394","https://openalex.org/W2136567909","https://openalex.org/W2142598588","https://openalex.org/W2142796125","https://openalex.org/W2144998676","https://openalex.org/W2146985413","https://openalex.org/W2157365507","https://openalex.org/W2157938277","https://openalex.org/W2158996088","https://openalex.org/W2161151688","https://openalex.org/W2161596896","https://openalex.org/W2166575328","https://openalex.org/W2495832247","https://openalex.org/W6649707446"],"related_works":["https://openalex.org/W2946599741","https://openalex.org/W2147472674","https://openalex.org/W2561391236","https://openalex.org/W1888349473","https://openalex.org/W2136856901","https://openalex.org/W1567853508","https://openalex.org/W4225106352","https://openalex.org/W3165545667","https://openalex.org/W3171039768","https://openalex.org/W47248631"],"abstract_inverted_index":{"Researchers":[0],"proposed":[1],"several":[2],"criteria":[3,33,49],"to":[4,55,62,69],"assess":[5],"the":[6,17,21,57,58,63,71],"quality":[7],"of":[8,16,24,52],"predicted":[9,59],"protein":[10,60,65],"structures":[11],"because":[12],"it":[13],"is":[14,74],"one":[15],"essential":[18],"tasks":[19],"in":[20],"Critical":[22],"Assessment":[23],"Techniques":[25],"for":[26],"Protein":[27],"Structure":[28],"Prediction":[29],"(CASP)":[30],"competitions.":[31],"Popular":[32],"include":[34],"root":[35],"mean":[36],"squared":[37],"deviation":[38],"(RMSD),":[39],"MaxSub":[40],"score,":[41],"TM-score,":[42],"GDT-TS":[43],"and":[44],"GDT-HA":[45],"scores.":[46],"All":[47],"these":[48],"require":[50],"calculation":[51],"rigid":[53,72],"transformations":[54,73],"superimpose":[56],"structure":[61],"native":[64],"structure.":[66],"Yet,":[67],"how":[68],"obtain":[70],"unknown":[75],"or":[76],"with":[77],"high":[78],"time":[79],"complexity,":[80],"and,":[81],"hence,":[82],"heuristic":[83],"algorithms":[84],"were":[85],"proposed.":[86]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
