{"id":"https://openalex.org/W2072448219","doi":"https://doi.org/10.1145/2808719.2808730","title":"The potential power of dynamics in epistasis analysis","display_name":"The potential power of dynamics in epistasis analysis","publication_year":2015,"publication_date":"2015-09-09","ids":{"openalex":"https://openalex.org/W2072448219","doi":"https://doi.org/10.1145/2808719.2808730","mag":"2072448219"},"language":"en","primary_location":{"id":"doi:10.1145/2808719.2808730","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2808719.2808730","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.20381/ruor-4194","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011549216","display_name":"Aseel Awdeh","orcid":"https://orcid.org/0000-0003-0578-090X"},"institutions":[{"id":"https://openalex.org/I153718931","display_name":"University of Ottawa","ror":"https://ror.org/03c4mmv16","country_code":"CA","type":"education","lineage":["https://openalex.org/I153718931"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Aseel Awdeh","raw_affiliation_strings":["University of Ottawa, Ottawa, ON, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Ottawa, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I153718931"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026871523","display_name":"Hilary Phenix","orcid":null},"institutions":[{"id":"https://openalex.org/I153718931","display_name":"University of Ottawa","ror":"https://ror.org/03c4mmv16","country_code":"CA","type":"education","lineage":["https://openalex.org/I153718931"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Hilary Phenix","raw_affiliation_strings":["University of Ottawa, Ottawa, ON, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Ottawa, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I153718931"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057807980","display_name":"Mads K\u00e6rn","orcid":"https://orcid.org/0000-0002-9371-666X"},"institutions":[{"id":"https://openalex.org/I153718931","display_name":"University of Ottawa","ror":"https://ror.org/03c4mmv16","country_code":"CA","type":"education","lineage":["https://openalex.org/I153718931"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Mads Kaern","raw_affiliation_strings":["University of Ottawa, Ottawa, ON, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Ottawa, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I153718931"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009680404","display_name":"Theodore J. Perkins","orcid":"https://orcid.org/0000-0002-6622-8003"},"institutions":[{"id":"https://openalex.org/I153718931","display_name":"University of Ottawa","ror":"https://ror.org/03c4mmv16","country_code":"CA","type":"education","lineage":["https://openalex.org/I153718931"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Theodore J. Perkins","raw_affiliation_strings":["University of Ottawa, Ottawa, ON, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Ottawa, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I153718931"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1506,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.56554928,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"106","last_page":"115"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epistasis","display_name":"Epistasis","score":0.9221853017807007},{"id":"https://openalex.org/keywords/identifiability","display_name":"Identifiability","score":0.7096426486968994},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5062288641929626},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48294132947921753},{"id":"https://openalex.org/keywords/observable","display_name":"Observable","score":0.46519196033477783},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.42864465713500977},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3759492039680481},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3645413815975189},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3251655697822571},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.18095755577087402},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1258263885974884},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.07927334308624268}],"concepts":[{"id":"https://openalex.org/C61727976","wikidata":"https://www.wikidata.org/wiki/Q751748","display_name":"Epistasis","level":3,"score":0.9221853017807007},{"id":"https://openalex.org/C122770356","wikidata":"https://www.wikidata.org/wiki/Q1656753","display_name":"Identifiability","level":2,"score":0.7096426486968994},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5062288641929626},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48294132947921753},{"id":"https://openalex.org/C32848918","wikidata":"https://www.wikidata.org/wiki/Q845789","display_name":"Observable","level":2,"score":0.46519196033477783},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.42864465713500977},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3759492039680481},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3645413815975189},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3251655697822571},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.18095755577087402},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1258263885974884},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.07927334308624268},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/2808719.2808730","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2808719.2808730","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},{"id":"pmh:oai:ruor.uottawa.ca:10393/32747","is_oa":false,"landing_page_url":"http://hdl.handle.net/10393/32747","pdf_url":null,"source":{"id":"https://openalex.org/S4306400902","display_name":"uO Research (University of Ottawa)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I153718931","host_organization_name":"University of Ottawa","host_organization_lineage":["https://openalex.org/I153718931"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Thesis"},{"id":"doi:10.20381/ruor-4194","is_oa":true,"landing_page_url":"https://doi.org/10.20381/ruor-4194","pdf_url":null,"source":{"id":"https://openalex.org/S7407053184","display_name":"University of Ottawa - Library","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.20381/ruor-4194","is_oa":true,"landing_page_url":"https://doi.org/10.20381/ruor-4194","pdf_url":null,"source":{"id":"https://openalex.org/S7407053184","display_name":"University of Ottawa - Library","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"score":0.75,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G2800377923","display_name":null,"funder_award_id":"305011","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G8194223854","display_name":null,"funder_award_id":"130397","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"}],"funders":[{"id":"https://openalex.org/F4320334392","display_name":"Health Canada","ror":"https://ror.org/05p8nb362"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W89551800","https://openalex.org/W393992852","https://openalex.org/W1481919380","https://openalex.org/W1545459885","https://openalex.org/W1971141362","https://openalex.org/W1971224531","https://openalex.org/W1990234437","https://openalex.org/W1996163048","https://openalex.org/W2001607419","https://openalex.org/W2010689735","https://openalex.org/W2012139697","https://openalex.org/W2018659462","https://openalex.org/W2023348596","https://openalex.org/W2023460495","https://openalex.org/W2028839103","https://openalex.org/W2030459888","https://openalex.org/W2039705224","https://openalex.org/W2042688172","https://openalex.org/W2058704592","https://openalex.org/W2073881372","https://openalex.org/W2076372398","https://openalex.org/W2079829409","https://openalex.org/W2084377907","https://openalex.org/W2086187432","https://openalex.org/W2094189284","https://openalex.org/W2094683075","https://openalex.org/W2101593655","https://openalex.org/W2107235611","https://openalex.org/W2110177138","https://openalex.org/W2111123076","https://openalex.org/W2117033519","https://openalex.org/W2125858955","https://openalex.org/W2127073167","https://openalex.org/W2132935366","https://openalex.org/W2133102806","https://openalex.org/W2133992568","https://openalex.org/W2140812562","https://openalex.org/W2145668963","https://openalex.org/W2153134824","https://openalex.org/W2159460045","https://openalex.org/W2161297153","https://openalex.org/W2161922735","https://openalex.org/W2163296115","https://openalex.org/W2166106382","https://openalex.org/W3099289621","https://openalex.org/W6676180668","https://openalex.org/W6892148946"],"related_works":["https://openalex.org/W2724847603","https://openalex.org/W2034041141","https://openalex.org/W2184661725","https://openalex.org/W112856298","https://openalex.org/W2573470972","https://openalex.org/W2105626102","https://openalex.org/W2131038454","https://openalex.org/W4240568257","https://openalex.org/W2900187352","https://openalex.org/W1996342314"],"abstract_inverted_index":{"Inferring":[0],"regulatory":[1,33],"relationships":[2,34],"between":[3,13],"genes,":[4],"including":[5],"the":[6,9,78,97,107,140],"direction":[7],"and":[8,51,127],"nature":[10],"of":[11,42,54,80,92,110,119,122,142],"influence":[12],"them,":[14],"is":[15,28],"a":[16,93,100],"fundamental":[17],"challenge":[18],"in":[19,35,44,84,86],"molecular":[20],"genetics.":[21],"One":[22],"classical":[23],"approach":[24,61],"to":[25,67,70,88,145],"this":[26,59],"problem":[27],"epistasis":[29,82,112,143],"analysis,":[30,83],"which":[31],"infers":[32],"genetic":[36,90,123],"pathways":[37],"by":[38,99,114],"looking":[39],"at":[40],"patterns":[41],"change":[43],"an":[45,116],"observable":[46],"trait":[47],"resulting":[48],"from":[49],"individual":[50],"combinatorial":[52],"deletion":[53],"genes.":[55],"As":[56],"useful":[57],"as":[58],"broad":[60],"has":[62],"been,":[63],"there":[64],"are":[65],"limits":[66],"its":[68],"ability":[69],"discriminate":[71,146],"alternative":[72,147],"pathway":[73,98],"structures.":[74,149],"Here,":[75],"we":[76,95],"explore":[77,106],"possibility":[79],"dynamic":[81,128],"which,":[85],"addition":[87],"performing":[89],"perturbations":[91],"pathway,":[94],"drive":[96],"dynamic,":[101],"time-varying":[102],"upstream":[103],"signal.":[104],"We":[105,130],"theoretical":[108],"power":[109,141],"dynamical":[111],"analysis":[113,118,144],"conducting":[115],"identifiability":[117],"Boolean":[120],"models":[121],"pathways,":[124],"comparing":[125],"static":[126],"approaches.":[129],"find":[131],"that":[132],"even":[133],"relatively":[134],"simple":[135],"input":[136],"dynamics":[137],"greatly":[138],"increases":[139],"network":[148]},"counts_by_year":[{"year":2017,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
