{"id":"https://openalex.org/W2022771323","doi":"https://doi.org/10.1145/2807591.2807630","title":"Engineering inhibitory proteins with InSiPS: the in-silico protein synthesizer","display_name":"Engineering inhibitory proteins with InSiPS: the in-silico protein synthesizer","publication_year":2015,"publication_date":"2015-10-27","ids":{"openalex":"https://openalex.org/W2022771323","doi":"https://doi.org/10.1145/2807591.2807630","mag":"2022771323"},"language":"en","primary_location":{"id":"doi:10.1145/2807591.2807630","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2807591.2807630","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077984172","display_name":"Andrew Schoenrock","orcid":null},"institutions":[{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Andrew Schoenrock","raw_affiliation_strings":["Carleton University, Ottawa, Canada","Carleton University / Ottawa / Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carleton University, Ottawa, Canada","institution_ids":["https://openalex.org/I67031392"]},{"raw_affiliation_string":"Carleton University / Ottawa / Canada","institution_ids":["https://openalex.org/I67031392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056236448","display_name":"Daniel Burnside","orcid":null},"institutions":[{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Daniel Burnside","raw_affiliation_strings":["Carleton University, Ottawa, Canada","Carleton University / Ottawa / Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carleton University, Ottawa, Canada","institution_ids":["https://openalex.org/I67031392"]},{"raw_affiliation_string":"Carleton University / Ottawa / Canada","institution_ids":["https://openalex.org/I67031392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044604157","display_name":"Houman Moteshareie","orcid":"https://orcid.org/0000-0002-6365-0276"},"institutions":[{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Houman Moteshareie","raw_affiliation_strings":["Carleton University, Ottawa, Canada","Carleton University / Ottawa / Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carleton University, Ottawa, Canada","institution_ids":["https://openalex.org/I67031392"]},{"raw_affiliation_string":"Carleton University / Ottawa / Canada","institution_ids":["https://openalex.org/I67031392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049171921","display_name":"Alex Wong","orcid":"https://orcid.org/0000-0001-6249-3013"},"institutions":[{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Alex Wong","raw_affiliation_strings":["Carleton University, Ottawa, Canada","Carleton University / Ottawa / Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carleton University, Ottawa, Canada","institution_ids":["https://openalex.org/I67031392"]},{"raw_affiliation_string":"Carleton University / Ottawa / Canada","institution_ids":["https://openalex.org/I67031392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005719112","display_name":"Ashkan Golshani","orcid":"https://orcid.org/0009-0008-9171-6245"},"institutions":[{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ashkan Golshani","raw_affiliation_strings":["Carleton University, Ottawa, Canada","Carleton University / Ottawa / Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carleton University, Ottawa, Canada","institution_ids":["https://openalex.org/I67031392"]},{"raw_affiliation_string":"Carleton University / Ottawa / Canada","institution_ids":["https://openalex.org/I67031392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113496226","display_name":"Frank Dehne","orcid":null},"institutions":[{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Frank Dehne","raw_affiliation_strings":["Carleton University, Ottawa, Canada","Carleton University / Ottawa / Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carleton University, Ottawa, Canada","institution_ids":["https://openalex.org/I67031392"]},{"raw_affiliation_string":"Carleton University / Ottawa / Canada","institution_ids":["https://openalex.org/I67031392"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078223816","display_name":"James R. Green","orcid":"https://orcid.org/0000-0002-6039-2355"},"institutions":[{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"James R. Green","raw_affiliation_strings":["Carleton University, Ottawa, Canada","Carleton University / Ottawa / Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carleton University, Ottawa, Canada","institution_ids":["https://openalex.org/I67031392"]},{"raw_affiliation_string":"Carleton University / Ottawa / Canada","institution_ids":["https://openalex.org/I67031392"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4518,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.65667736,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9865000247955322,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.8494782447814941},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5623119473457336},{"id":"https://openalex.org/keywords/target-protein","display_name":"Target protein","score":0.540737509727478},{"id":"https://openalex.org/keywords/inhibitory-postsynaptic-potential","display_name":"Inhibitory postsynaptic potential","score":0.5308642983436584},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5208595395088196},{"id":"https://openalex.org/keywords/massively-parallel","display_name":"Massively parallel","score":0.45834729075431824},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3661690950393677},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.3076947331428528},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.29224327206611633},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2770342230796814},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.24385830760002136},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.07085362076759338}],"concepts":[{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.8494782447814941},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5623119473457336},{"id":"https://openalex.org/C2780430158","wikidata":"https://www.wikidata.org/wiki/Q7685902","display_name":"Target protein","level":3,"score":0.540737509727478},{"id":"https://openalex.org/C17077164","wikidata":"https://www.wikidata.org/wiki/Q1185869","display_name":"Inhibitory postsynaptic potential","level":2,"score":0.5308642983436584},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5208595395088196},{"id":"https://openalex.org/C190475519","wikidata":"https://www.wikidata.org/wiki/Q544384","display_name":"Massively parallel","level":2,"score":0.45834729075431824},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3661690950393677},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3076947331428528},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.29224327206611633},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2770342230796814},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.24385830760002136},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.07085362076759338},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2807591.2807630","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2807591.2807630","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1494453148","https://openalex.org/W1995043867","https://openalex.org/W2002987613","https://openalex.org/W2007746130","https://openalex.org/W2008279485","https://openalex.org/W2009485159","https://openalex.org/W2020424190","https://openalex.org/W2022368654","https://openalex.org/W2034606571","https://openalex.org/W2057810258","https://openalex.org/W2132438828","https://openalex.org/W2141468602","https://openalex.org/W2148895983","https://openalex.org/W2168374535","https://openalex.org/W2170033348","https://openalex.org/W2187536729","https://openalex.org/W2915108429","https://openalex.org/W4236463097"],"related_works":["https://openalex.org/W2912862995","https://openalex.org/W3129816939","https://openalex.org/W2985427592","https://openalex.org/W2101501829","https://openalex.org/W2003194288","https://openalex.org/W2060263731","https://openalex.org/W391093122","https://openalex.org/W1521239975","https://openalex.org/W4361305867","https://openalex.org/W2216009228"],"abstract_inverted_index":{"Engineered":[0],"proteins":[1,5,20,92,113,123],"are":[2,11,94],"synthetic":[3,34],"novel":[4],"(not":[6],"found":[7],"in":[8,127],"nature)":[9],"that":[10,81,93],"designed":[12,122],"to":[13,38,96],"fulfill":[14],"a":[15,33,39,43,71,99],"predetermined":[16],"biological":[17],"function.":[18],"Such":[19],"can":[21],"be":[22],"used":[23],"as":[24],"molecular":[25],"markers,":[26],"inhibitory":[27,86,132],"agents,":[28],"or":[29],"drugs.":[30],"For":[31],"example,":[32],"protein":[35,41,52,102],"could":[36],"bind":[37],"critical":[40],"of":[42,49,58],"pathogen,":[44],"thereby":[45],"inhibiting":[46],"the":[47,50,56,59,66,77,106,128],"function":[48],"target":[51,101],"and":[53,130],"potentially":[54],"reducing":[55],"impact":[57],"pathogen.":[60],"In":[61],"this":[62],"paper":[63],"we":[64],"present":[65],"In-Silico":[67],"Protein":[68],"Synthesizer":[69],"(InSiPS),":[70],"massively":[72],"parallel":[73],"computational":[74],"tool":[75],"for":[76],"IBM":[78],"Blue":[79],"Gene/Q":[80],"is":[82],"aimed":[83],"at":[84],"designing":[85],"proteins.":[87],"More":[88],"precisely,":[89],"InSiPS":[90,121],"designs":[91],"predicted":[95],"interact":[97],"with":[98],"given":[100],"(and":[103],"may":[104],"inhibit":[105],"target's":[107],"cellular":[108],"functions)":[109],"while":[110],"leaving":[111],"non-target":[112],"unaffected":[114],"(to":[115],"minimize":[116],"side-effects).":[117],"As":[118],"proof-of-concepts,":[119],"two":[120],"have":[124,134],"been":[125,135],"synthesized":[126],"lab":[129],"their":[131],"properties":[133],"experimentally":[136],"verified":[137],"through":[138],"wet-lab":[139],"experimentation.":[140]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
