{"id":"https://openalex.org/W2015640878","doi":"https://doi.org/10.1145/2792745.2792784","title":"The CIPRES workbench","display_name":"The CIPRES workbench","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2015640878","doi":"https://doi.org/10.1145/2792745.2792784","mag":"2015640878"},"language":"en","primary_location":{"id":"doi:10.1145/2792745.2792784","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2792745.2792784","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2015 XSEDE Conference on Scientific Advancements Enabled by Enhanced Cyberinfrastructure - XSEDE '15","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035660803","display_name":"Mark A. Miller","orcid":"https://orcid.org/0000-0001-9590-3728"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark A. Miller","raw_affiliation_strings":["University of California, San Diego, CA","University of California-San-Diego, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, San Diego, CA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"University of California-San-Diego, CA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041940220","display_name":"Terri Schwartz","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Terri Schwartz","raw_affiliation_strings":["University of California, San Diego, CA","University of California-San-Diego, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, San Diego, CA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"University of California-San-Diego, CA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040166190","display_name":"Paul Hoover","orcid":"https://orcid.org/0000-0001-5343-429X"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul Hoover","raw_affiliation_strings":["University of California, San Diego, CA","University of California-San-Diego, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, San Diego, CA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"University of California-San-Diego, CA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059902269","display_name":"Kenneth Yoshimoto","orcid":"https://orcid.org/0000-0002-7560-7507"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kenneth Yoshimoto","raw_affiliation_strings":["University of California, San Diego, CA","University of California-San-Diego, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, San Diego, CA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"University of California-San-Diego, CA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085502013","display_name":"Subhashini Sivagnanam","orcid":"https://orcid.org/0000-0002-9250-7823"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Subhashini Sivagnanam","raw_affiliation_strings":["University of California, San Diego, CA","University of California-San-Diego, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, San Diego, CA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"University of California-San-Diego, CA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":null,"display_name":"Amit Majumdar","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amit Majumdar","raw_affiliation_strings":["University of California, San Diego, CA","University of California-San-Diego, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, San Diego, CA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"University of California-San-Diego, CA","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":4.3775,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.94881676,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workbench","display_name":"Workbench","score":0.841325044631958},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.77668297290802},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.6190066933631897},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6177898645401001},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.508562445640564},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4852176010608673},{"id":"https://openalex.org/keywords/web-api","display_name":"Web API","score":0.4842953085899353},{"id":"https://openalex.org/keywords/overhead","display_name":"Overhead (engineering)","score":0.4591085910797119},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.42334023118019104},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4140357971191406},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.41384100914001465},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.38322263956069946},{"id":"https://openalex.org/keywords/web-development","display_name":"Web development","score":0.2786126136779785},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.13500314950942993}],"concepts":[{"id":"https://openalex.org/C2779145975","wikidata":"https://www.wikidata.org/wiki/Q347690","display_name":"Workbench","level":3,"score":0.841325044631958},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.77668297290802},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.6190066933631897},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6177898645401001},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.508562445640564},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4852176010608673},{"id":"https://openalex.org/C127613066","wikidata":"https://www.wikidata.org/wiki/Q557770","display_name":"Web API","level":4,"score":0.4842953085899353},{"id":"https://openalex.org/C2779960059","wikidata":"https://www.wikidata.org/wiki/Q7113681","display_name":"Overhead (engineering)","level":2,"score":0.4591085910797119},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.42334023118019104},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4140357971191406},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.41384100914001465},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.38322263956069946},{"id":"https://openalex.org/C79373723","wikidata":"https://www.wikidata.org/wiki/Q386275","display_name":"Web development","level":3,"score":0.2786126136779785},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.13500314950942993},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2792745.2792784","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2792745.2792784","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2015 XSEDE Conference on Scientific Advancements Enabled by Enhanced Cyberinfrastructure - XSEDE '15","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4399999976158142,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G832572296","display_name":null,"funder_award_id":"ACI-1339856","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1526257973","https://openalex.org/W1536929369","https://openalex.org/W1700785270","https://openalex.org/W1857624741","https://openalex.org/W1978248517","https://openalex.org/W2021210077","https://openalex.org/W2021399907","https://openalex.org/W2022630637","https://openalex.org/W2024872854","https://openalex.org/W2028302194","https://openalex.org/W2065155050","https://openalex.org/W2073273233","https://openalex.org/W2082640495","https://openalex.org/W2096704460","https://openalex.org/W2097732814","https://openalex.org/W2112147882","https://openalex.org/W2129154270","https://openalex.org/W2146429980","https://openalex.org/W2156004139","https://openalex.org/W2161645441","https://openalex.org/W2177882625","https://openalex.org/W2611511275","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W124800898","https://openalex.org/W4231577459","https://openalex.org/W4383898416","https://openalex.org/W148913361","https://openalex.org/W124504236","https://openalex.org/W2263165406","https://openalex.org/W3207409829","https://openalex.org/W2171120556","https://openalex.org/W935221178","https://openalex.org/W2279831871"],"abstract_inverted_index":{"Here":[0],"we":[1],"describe":[2],"the":[3,47,83,136,142],"CIPRES":[4],"Workbench":[5],"(CW),":[6],"an":[7,87],"open":[8],"source":[9],"software":[10],"framework":[11],"for":[12],"creating":[13],"new":[14],"science":[15],"gateways":[16],"with":[17,89,109],"minimal":[18],"overhead.":[19],"The":[20,104],"CW":[21,84,137],"is":[22,53,132],"a":[23,31,67,77,110,112,146],"web":[24,68],"application":[25,48,114],"that":[26],"can":[27,35],"be":[28,36,56],"deployed":[29],"on":[30],"modest":[32],"server,":[33],"and":[34,59,99,122],"configured":[37],"to":[38,43,55,63,115,119,134,138],"submit":[39,139],"command":[40,117],"line":[41],"instructions":[42],"any":[44],"resource":[45],"where":[46,93],"has":[49],"submission":[50],"privileges.":[51],"It":[52],"designed":[54],"highly":[57],"configurable/customizable,":[58],"supports":[60],"GUI-based":[61],"access":[62,75],"HPC":[64],"resources":[65],"through":[66],"browser":[69,81],"interface":[70],"as":[71,73,145],"well":[72],"programmatic":[74],"via":[76,141],"ReSTful":[78,105],"API.":[79],"Using":[80],"access,":[82],"architecture":[85],"creates":[86],"environment":[88],"secure":[90],"user":[91,94],"accounts":[92],"input":[95],"data,":[96],"job":[97,100],"results,":[98],"provenance":[101],"are":[102],"stored.":[103],"API":[106],"allows":[107],"users":[108],"registered":[111],"client":[113],"deliver":[116],"lines":[118],"analytical":[120],"codes":[121],"retrieve":[123],"results":[124],"from":[125],"remote":[126],"compute":[127],"resources.":[128],"A":[129],"development":[130],"effort":[131],"underway":[133],"allow":[135],"jobs":[140],"Science":[143],"Gateways":[144],"Platform":[147],"(SciGaP)":[148],"services":[149],"hosted":[150],"at":[151],"Indiana":[152],"University.":[153]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
