{"id":"https://openalex.org/W2111590004","doi":"https://doi.org/10.1145/2791347.2791360","title":"Ontology-assisted keyword search for NeuroML models","display_name":"Ontology-assisted keyword search for NeuroML models","publication_year":2015,"publication_date":"2015-06-29","ids":{"openalex":"https://openalex.org/W2111590004","doi":"https://doi.org/10.1145/2791347.2791360","mag":"2111590004"},"language":"en","primary_location":{"id":"doi:10.1145/2791347.2791360","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2791347.2791360","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 27th International Conference on Scientific and Statistical Database Management","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052908164","display_name":"Justas Birgiolas","orcid":"https://orcid.org/0000-0002-7923-885X"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Justas Birgiolas","raw_affiliation_strings":["Arizona State University, Tempe, Arizona"],"affiliations":[{"raw_affiliation_string":"Arizona State University, Tempe, Arizona","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111819487","display_name":"Suzanne W. Dietrich","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suzanne W. Dietrich","raw_affiliation_strings":["Arizona State University, Phoenix, Arizona"],"affiliations":[{"raw_affiliation_string":"Arizona State University, Phoenix, Arizona","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073347260","display_name":"Sharon Crook","orcid":"https://orcid.org/0000-0003-1659-0749"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sharon Crook","raw_affiliation_strings":["Arizona State University, Tempe, Arizona"],"affiliations":[{"raw_affiliation_string":"Arizona State University, Tempe, Arizona","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074963371","display_name":"Ashwin Rajadesingan","orcid":"https://orcid.org/0000-0001-5387-1350"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ashwin Rajadesingan","raw_affiliation_strings":["Arizona State University, Tempe, Arizona"],"affiliations":[{"raw_affiliation_string":"Arizona State University, Tempe, Arizona","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063675054","display_name":"Chao Zhang","orcid":"https://orcid.org/0000-0002-8924-7629"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chao Zhang","raw_affiliation_strings":["Arizona State University, Tempe, Arizona"],"affiliations":[{"raw_affiliation_string":"Arizona State University, Tempe, Arizona","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066537203","display_name":"Shriharsha Velugoti Penchala","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shriharsha Velugoti Penchala","raw_affiliation_strings":["Arizona State University, Tempe, Arizona"],"affiliations":[{"raw_affiliation_string":"Arizona State University, Tempe, Arizona","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035816632","display_name":"Veerasekhar Addepalli","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Veerasekhar Addepalli","raw_affiliation_strings":["Arizona State University, Tempe, Arizona"],"affiliations":[{"raw_affiliation_string":"Arizona State University, Tempe, Arizona","institution_ids":["https://openalex.org/I55732556"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5052908164"],"corresponding_institution_ids":["https://openalex.org/I55732556"],"apc_list":null,"apc_paid":null,"fwci":0.7981,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.83779843,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10320","display_name":"Neural Networks and Applications","score":0.9801999926567078,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9639999866485596,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8737144470214844},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7464271783828735},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6014660000801086},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.594440221786499},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5274242162704468},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.5044180154800415},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.4310312271118164},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.42654716968536377},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.42252233624458313},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.36096274852752686},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.25947457551956177},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.12616273760795593},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11722439527511597}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8737144470214844},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7464271783828735},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6014660000801086},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.594440221786499},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5274242162704468},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.5044180154800415},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.4310312271118164},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.42654716968536377},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.42252233624458313},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.36096274852752686},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.25947457551956177},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.12616273760795593},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11722439527511597},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2791347.2791360","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2791347.2791360","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 27th International Conference on Scientific and Statistical Database Management","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2713351662","display_name":null,"funder_award_id":"R01MH081905","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G8916619046","display_name":null,"funder_award_id":"R01EB014640","funder_id":"https://openalex.org/F4320337363","funder_display_name":"National Institute of Biomedical Imaging and Bioengineering"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"},{"id":"https://openalex.org/F4320337363","display_name":"National Institute of Biomedical Imaging and Bioengineering","ror":"https://ror.org/00372qc85"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1572535120","https://openalex.org/W1833785989","https://openalex.org/W1927830505","https://openalex.org/W1992839273","https://openalex.org/W2057481867","https://openalex.org/W2059715474","https://openalex.org/W2066437172","https://openalex.org/W2107062718","https://openalex.org/W2121350579","https://openalex.org/W2127950479","https://openalex.org/W2408371970"],"related_works":["https://openalex.org/W2732632690","https://openalex.org/W269285493","https://openalex.org/W2150375996","https://openalex.org/W2066689607","https://openalex.org/W26549824","https://openalex.org/W1506177826","https://openalex.org/W2375862234","https://openalex.org/W2159818280","https://openalex.org/W2464347310","https://openalex.org/W2013218444"],"abstract_inverted_index":{"NeuroML":[0,16,29,70,88,107],"is":[1,17],"an":[2,66],"extensible":[3],"markup":[4],"language":[5],"for":[6,69,113,162],"describing":[7],"complex":[8],"mathematical":[9],"models":[10,30,37,89,108],"of":[11,35,65,78,93,102,106,140,155,169],"neurons":[12],"and":[13,51,63,90,109,151,164,179],"neuronal":[14],"networks.":[15],"unique":[18],"in":[19,53,132],"its":[20,159],"modular,":[21],"multi-scale":[22],"structure":[23,105],"--":[24],"not":[25],"only":[26],"can":[27,48],"entire":[28],"be":[31,49],"exchanged,":[32],"but":[33],"subcomponents":[34],"these":[36],"that":[38,84,129],"correspond":[39],"to":[40,115,120,126],"neuroscience":[41,114],"objects,":[42],"like":[43],"channels":[44],"or":[45],"synapses,":[46],"also":[47],"shared":[50],"reimplemented":[52],"a":[54],"different":[55],"model.":[56],"This":[57],"paper":[58,74],"presents":[59],"the":[60,73,76,79,82,86,91,94,103,110,122,146,156,177,183],"design,":[61],"implementation,":[62],"evaluation":[64,154],"ontology-assisted":[67],"search":[68,96],"models.":[71],"Specifically,":[72],"describes":[75],"design":[77],"system,":[80],"including":[81],"database":[83,178],"stores":[85],"modular":[87],"architecture":[92],"Web-based":[95],"(neuroml-db.org).":[97],"The":[98],"implementation":[99,137],"takes":[100,138],"advantage":[101,139],"nested":[104],"NeuroLex":[111,127,147],"ontology":[112,180],"provide":[116],"additional":[117],"semantic":[118,142,184],"information":[119],"enhance":[121],"search.":[123],"In":[124],"addition":[125],"terms":[128],"may":[130],"exist":[131],"model":[133],"metadata,":[134],"this":[135],"initial":[136],"several":[141],"relationships":[143],"provided":[144],"by":[145,173],"ontology:":[148],"Is_part_of,":[149],"Located_in,":[150],"Neurotransmitter.":[152],"An":[153],"system":[157],"illustrates":[158],"effectiveness":[160],"both":[161],"functionality":[163],"performance,":[165],"covering":[166],"various":[167],"types":[168],"searches":[170,175,181],"broken":[171],"down":[172],"keyword":[174],"over":[176],"using":[182],"relationships.":[185]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
