{"id":"https://openalex.org/W2401811235","doi":"https://doi.org/10.1145/2768830","title":"Biomedical Ontology Quality Assurance Using a Big Data Approach","display_name":"Biomedical Ontology Quality Assurance Using a Big Data Approach","publication_year":2016,"publication_date":"2016-05-24","ids":{"openalex":"https://openalex.org/W2401811235","doi":"https://doi.org/10.1145/2768830","mag":"2401811235"},"language":"en","primary_location":{"id":"doi:10.1145/2768830","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2768830","pdf_url":null,"source":{"id":"https://openalex.org/S41523882","display_name":"ACM Transactions on Knowledge Discovery from Data","issn_l":"1556-4681","issn":["1556-4681","1556-472X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Transactions on Knowledge Discovery from Data","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049834185","display_name":"Licong Cui","orcid":"https://orcid.org/0000-0001-5549-8780"},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Licong Cui","raw_affiliation_strings":["University of Kentucky"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Kentucky","institution_ids":["https://openalex.org/I143302722"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063163780","display_name":"Shiqiang Tao","orcid":"https://orcid.org/0000-0003-1515-3184"},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shiqiang Tao","raw_affiliation_strings":["University of Kentucky"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Kentucky","institution_ids":["https://openalex.org/I143302722"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100392487","display_name":"Guo\u2010Qiang Zhang","orcid":"https://orcid.org/0000-0002-3663-1109"},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guo-Qiang Zhang","raw_affiliation_strings":["University of Kentucky"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Kentucky","institution_ids":["https://openalex.org/I143302722"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5049834185"],"corresponding_institution_ids":["https://openalex.org/I143302722"],"apc_list":null,"apc_paid":null,"fwci":2.263,"has_fulltext":false,"cited_by_count":24,"citation_normalized_percentile":{"value":0.88000404,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"10","issue":"4","first_page":"1","last_page":"28"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9581999778747559,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8490859270095825},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.5823978185653687},{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.5818816423416138},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.535843551158905},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.4716355502605438},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4662102162837982},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.46296218037605286},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.4626311957836151},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.42186278104782104},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.35534942150115967},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3463212847709656},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2050786018371582}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8490859270095825},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.5823978185653687},{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.5818816423416138},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.535843551158905},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.4716355502605438},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4662102162837982},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.46296218037605286},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.4626311957836151},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.42186278104782104},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.35534942150115967},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3463212847709656},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2050786018371582},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2768830","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2768830","pdf_url":null,"source":{"id":"https://openalex.org/S41523882","display_name":"ACM Transactions on Knowledge Discovery from Data","issn_l":"1556-4681","issn":["1556-4681","1556-472X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Transactions on Knowledge Discovery from Data","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6000000238418579,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1830089547","display_name":null,"funder_award_id":"UL1TR000117","funder_id":"https://openalex.org/F4320333574","funder_display_name":"Center for Clinical and Translational Science, University of Kentucky"}],"funders":[{"id":"https://openalex.org/F4320333574","display_name":"Center for Clinical and Translational Science, University of Kentucky","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W124939224","https://openalex.org/W171834292","https://openalex.org/W174626886","https://openalex.org/W1496540677","https://openalex.org/W1527927437","https://openalex.org/W1540478817","https://openalex.org/W1562756378","https://openalex.org/W1583268303","https://openalex.org/W1593965921","https://openalex.org/W1964298951","https://openalex.org/W1976555799","https://openalex.org/W1987006508","https://openalex.org/W2030103067","https://openalex.org/W2042820337","https://openalex.org/W2054467869","https://openalex.org/W2078161054","https://openalex.org/W2081272921","https://openalex.org/W2103017472","https://openalex.org/W2111831827","https://openalex.org/W2111903862","https://openalex.org/W2122733285","https://openalex.org/W2125029697","https://openalex.org/W2134363729","https://openalex.org/W2136803152","https://openalex.org/W2137079713","https://openalex.org/W2145900192","https://openalex.org/W2156997379","https://openalex.org/W2159583324","https://openalex.org/W2161778764","https://openalex.org/W2162181203","https://openalex.org/W2162684758","https://openalex.org/W2163670493","https://openalex.org/W2173213060","https://openalex.org/W2262089314","https://openalex.org/W2418920503","https://openalex.org/W2502037753","https://openalex.org/W2511257128","https://openalex.org/W2613482391","https://openalex.org/W2620658586","https://openalex.org/W2621955298","https://openalex.org/W6600613391"],"related_works":["https://openalex.org/W2039735462","https://openalex.org/W2951665393","https://openalex.org/W4297803142","https://openalex.org/W2770499767","https://openalex.org/W2295806952","https://openalex.org/W2293521960","https://openalex.org/W172101468","https://openalex.org/W2405923535","https://openalex.org/W1511848092","https://openalex.org/W1708042184"],"abstract_inverted_index":{"This":[0],"article":[1],"presents":[2],"recent":[3],"progresses":[4],"made":[5],"in":[6,60,68,116,141,227,240],"using":[7,56,117],"scalable":[8],"cloud":[9,218],"computing":[10,219],"environment,":[11],"Hadoop":[12],"and":[13,21,123,205,210],"MapReduce,":[14],"to":[15,23,77,89,100,119,148,155,168,187,195,221,229,245],"perform":[16,90,120],"ontology":[17],"quality":[18],"assurance":[19],"(OQA),":[20],"points":[22],"areas":[24,143],"of":[25,66,94,129,152,217],"future":[26],"opportunity.":[27],"The":[28,165,191],"standard":[29],"sequential":[30],"approach":[31,154],"used":[32],"for":[33,43,46,107,160,174,184,198,206],"implementing":[34],"OQA":[35,52,157,203],"methods":[36,53,204],"can":[37,70,213],"take":[38,215],"weeks":[39],"if":[40],"not":[41,87],"months":[42,76],"exhaustive":[44,91,162],"analyses":[45],"large":[47,95],"biomedical":[48,189],"ontological":[49,96,208,249],"systems.":[50],"With":[51],"newly":[54],"implemented":[55],"massively":[57],"parallel":[58],"algorithms":[59],"the":[61,126,150,236,248],"MapReduce":[62,118,172],"framework,":[63],"several":[64],"orders":[65],"magnitude":[67],"speed-up":[69],"be":[71],"achieved":[72],"(e.g.,":[73],"from":[74],"three":[75,78,142],"hours).":[79],"Such":[80],"dramatically":[81],"reduced":[82],"time":[83],"makes":[84],"it":[85],"feasible":[86],"only":[88],"structural":[92,103,163],"analysis":[93,122],"hierarchies,":[97],"but":[98],"also":[99,214],"systematically":[101,222],"track":[102],"changes":[104],"between":[105],"versions":[106],"evolutional":[108,121],"analysis.":[109,164],"As":[110],"an":[111,181],"exemplar,":[112],"progress":[113],"is":[114,147,167,194],"reported":[115],"visualization":[124,237],"on":[125],"Systemized":[127],"Nomenclature":[128],"Medicine\u2014Clinical":[130],"Terms":[131],"(SNOMED":[132],"CT),":[133],"a":[134],"prominent":[135],"clinical":[136],"terminology":[137],"system.":[138],"Future":[139],"opportunities":[140],"are":[144,243],"described:":[145],"one":[146],"extend":[149],"scope":[151],"MapReduce-based":[153],"existing":[156],"methods,":[158],"especially":[159],"automated":[161],"second":[166],"apply":[169],"our":[170],"proposed":[171],"Pipeline":[173],"Lattice-based":[175],"Evaluation":[176],"(MaPLE)":[177],"approach,":[178],"demonstrated":[179],"as":[180],"exemplar":[182],"method":[183],"SNOMED":[185],"CT,":[186],"other":[188],"ontologies.":[190],"third":[192],"area":[193],"develop":[196],"interfaces":[197],"reviewing":[199],"results":[200],"obtained":[201],"by":[202],"visualizing":[207],"alignment":[209],"evolution,":[211],"which":[212],"advantage":[216],"technology":[220],"pre-compute":[223],"computationally":[224],"intensive":[225],"jobs":[226],"order":[228],"increase":[230],"performance":[231],"during":[232],"user":[233],"interactions":[234],"with":[235],"interface.":[238],"Advances":[239],"these":[241],"directions":[242],"expected":[244],"better":[246],"support":[247],"engineering":[250],"lifecycle.":[251]},"counts_by_year":[{"year":2023,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
