{"id":"https://openalex.org/W2027622079","doi":"https://doi.org/10.1145/2739482.2768440","title":"An Experimental Analysis of the Performance of SideChain Packing Algorithms","display_name":"An Experimental Analysis of the Performance of SideChain Packing Algorithms","publication_year":2015,"publication_date":"2015-07-10","ids":{"openalex":"https://openalex.org/W2027622079","doi":"https://doi.org/10.1145/2739482.2768440","mag":"2027622079"},"language":"en","primary_location":{"id":"doi:10.1145/2739482.2768440","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2739482.2768440","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Companion Publication of the 2015 Annual Conference on Genetic and Evolutionary Computation","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075390665","display_name":"Carlos A. Brizuela","orcid":"https://orcid.org/0000-0003-4621-0380"},"institutions":[{"id":"https://openalex.org/I64663401","display_name":"Center for Scientific Research and Higher Education at Ensenada","ror":"https://ror.org/04znhwb73","country_code":"MX","type":"facility","lineage":["https://openalex.org/I64663401"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"Carlos Brizuela","raw_affiliation_strings":["CICESE Research Center, Ensenada, Mexico"],"affiliations":[{"raw_affiliation_string":"CICESE Research Center, Ensenada, Mexico","institution_ids":["https://openalex.org/I64663401"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027741928","display_name":"Rosario I. Corona","orcid":"https://orcid.org/0000-0003-0470-4446"},"institutions":[{"id":"https://openalex.org/I102149020","display_name":"University of North Carolina at Charlotte","ror":"https://ror.org/04dawnj30","country_code":"US","type":"education","lineage":["https://openalex.org/I102149020"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rosario I. Corona","raw_affiliation_strings":["University of North Carolina at Charlotte, Charlotte, NC, USA"],"affiliations":[{"raw_affiliation_string":"University of North Carolina at Charlotte, Charlotte, NC, USA","institution_ids":["https://openalex.org/I102149020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019311569","display_name":"Christian Lezcano","orcid":null},"institutions":[{"id":"https://openalex.org/I8379220","display_name":"Universidad Nacional de Asunci\u00f3n","ror":"https://ror.org/03f27y887","country_code":"PY","type":"education","lineage":["https://openalex.org/I8379220"]}],"countries":["PY"],"is_corresponding":false,"raw_author_name":"Christian Lezcano","raw_affiliation_strings":["Facultad Polit\u00e9cnica - Universidad Nacional de Asunci\u00f3n, San Lorenzo, Paraguay"],"affiliations":[{"raw_affiliation_string":"Facultad Polit\u00e9cnica - Universidad Nacional de Asunci\u00f3n, San Lorenzo, Paraguay","institution_ids":["https://openalex.org/I8379220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018697915","display_name":"David Rodr\u00edguez","orcid":null},"institutions":[{"id":"https://openalex.org/I64663401","display_name":"Center for Scientific Research and Higher Education at Ensenada","ror":"https://ror.org/04znhwb73","country_code":"MX","type":"facility","lineage":["https://openalex.org/I64663401"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"David Rodr\u00edguez","raw_affiliation_strings":["CICESE Research Center, Ensenada, Mexico"],"affiliations":[{"raw_affiliation_string":"CICESE Research Center, Ensenada, Mexico","institution_ids":["https://openalex.org/I64663401"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016655479","display_name":"Jos\u00e9 Colbes","orcid":"https://orcid.org/0000-0002-7231-7563"},"institutions":[{"id":"https://openalex.org/I64663401","display_name":"Center for Scientific Research and Higher Education at Ensenada","ror":"https://ror.org/04znhwb73","country_code":"MX","type":"facility","lineage":["https://openalex.org/I64663401"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 D. Colbes","raw_affiliation_strings":["CICESE Research Center, Ensenada, Mexico"],"affiliations":[{"raw_affiliation_string":"CICESE Research Center, Ensenada, Mexico","institution_ids":["https://openalex.org/I64663401"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5075390665"],"corresponding_institution_ids":["https://openalex.org/I64663401"],"apc_list":null,"apc_paid":null,"fwci":0.4314,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.75940009,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"929","last_page":"933"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9196000099182129,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9196000099182129,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9151999950408936,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9021999835968018,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.7031642198562622},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.6385108828544617},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.615025520324707},{"id":"https://openalex.org/keywords/torsion","display_name":"Torsion (gastropod)","score":0.5757736563682556},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4711317718029022},{"id":"https://openalex.org/keywords/packing-problems","display_name":"Packing problems","score":0.4637276530265808}],"concepts":[{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.7031642198562622},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.6385108828544617},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.615025520324707},{"id":"https://openalex.org/C77461463","wikidata":"https://www.wikidata.org/wiki/Q7827201","display_name":"Torsion (gastropod)","level":2,"score":0.5757736563682556},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4711317718029022},{"id":"https://openalex.org/C130253271","wikidata":"https://www.wikidata.org/wiki/Q3851477","display_name":"Packing problems","level":2,"score":0.4637276530265808},{"id":"https://openalex.org/C141071460","wikidata":"https://www.wikidata.org/wiki/Q40821","display_name":"Surgery","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2739482.2768440","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2739482.2768440","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Companion Publication of the 2015 Annual Conference on Genetic and Evolutionary Computation","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7827794384","display_name":null,"funder_award_id":"SEP-CONACYT-CB-2010-154737","funder_id":"https://openalex.org/F4320321739","funder_display_name":"Consejo Nacional de Ciencia y Tecnolog\u00eda"}],"funders":[{"id":"https://openalex.org/F4320321739","display_name":"Consejo Nacional de Ciencia y Tecnolog\u00eda","ror":"https://ror.org/059ex5q34"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1575141465","https://openalex.org/W1744711765","https://openalex.org/W1970157506","https://openalex.org/W1972728295","https://openalex.org/W1979555059","https://openalex.org/W1986162418","https://openalex.org/W2011658408","https://openalex.org/W2015403140","https://openalex.org/W2027189612","https://openalex.org/W2028843689","https://openalex.org/W2034882714","https://openalex.org/W2106648157","https://openalex.org/W2117163574","https://openalex.org/W2122211218","https://openalex.org/W2131851312","https://openalex.org/W2141685906","https://openalex.org/W2145778523","https://openalex.org/W2152107372","https://openalex.org/W2156286349","https://openalex.org/W2164130591","https://openalex.org/W2165371996","https://openalex.org/W2168375512","https://openalex.org/W2168505829","https://openalex.org/W4246407778","https://openalex.org/W6637775724"],"related_works":["https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2053286651","https://openalex.org/W4231775656","https://openalex.org/W2181743346","https://openalex.org/W2187401768","https://openalex.org/W2046435967","https://openalex.org/W2181413294","https://openalex.org/W2989452537","https://openalex.org/W2052122378"],"abstract_inverted_index":{"This":[0],"paper":[1],"presents":[2],"a":[3,15,33,54,133,147],"brief":[4],"description":[5],"of":[6,21,45,56,79],"the":[7,36,51,66,71,86,89,99,112,138],"protein":[8,58],"side":[9,72],"chain":[10],"packing":[11],"problem":[12],"(PSCPP)":[13],"and":[14,27,53,82,88],"performance":[16,140],"assessment,":[17],"on":[18,40,106],"this":[19,130],"problem,":[20],"three":[22,41],"state-of-the-art":[23],"algorithms:":[24],"SCWRL4,":[25],"OPUS-Rota,":[26],"CIS-RR.":[28],"In":[29],"order":[30,124],"to":[31,120,125,150],"perform":[32],"fair":[34],"comparison,":[35],"algorithms":[37,100],"are":[38],"evaluated":[39],"data":[42],"sets,":[43],"two":[44],"them":[46],"were":[47],"previously":[48],"proposed":[49,60],"in":[50,123,152],"literature":[52],"set":[55],"723":[57],"structures":[59],"here.":[61],"Experimental":[62],"results":[63],"show":[64],"that":[65,118],"achieved":[67],"accuracy":[68],"when":[69],"evaluating":[70],"chain's":[73],"first":[74,87],"torsion":[75,91],"angle":[76],"(\u03c71)":[77],"is":[78,132,156],"approximately":[80],"86%":[81,131],"around":[83],"69%":[84],"for":[85,94,137],"second":[90],"angles":[92],"(\u03c71+2),":[93],"all":[95,98],"methods.":[96],"Although":[97],"achieve":[101],"similar":[102],"accuracies,":[103],"SCWRL4":[104],"requires":[105],"average,":[107],"less":[108],"computation":[109],"effort":[110],"than":[111],"others.":[113],"We":[114],"highlight":[115],"relevant":[116],"aspects":[117],"need":[119],"be":[121],"considered":[122],"verify":[126],"whether":[127],"or":[128],"not":[129],"theoretical":[134],"upper":[135],"bound":[136],"algorithms'":[139],"as":[141,143],"well":[142],"what":[144],"might":[145],"become":[146],"promising":[148],"direction":[149],"follow":[151],"case":[153],"an":[154],"improvement":[155],"possible.":[157]},"counts_by_year":[{"year":2016,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
