{"id":"https://openalex.org/W2052154556","doi":"https://doi.org/10.1145/2739480.2754706","title":"Evolutionary Learning of Syntax Patterns for Genic Interaction Extraction","display_name":"Evolutionary Learning of Syntax Patterns for Genic Interaction Extraction","publication_year":2015,"publication_date":"2015-07-07","ids":{"openalex":"https://openalex.org/W2052154556","doi":"https://doi.org/10.1145/2739480.2754706","mag":"2052154556"},"language":"en","primary_location":{"id":"doi:10.1145/2739480.2754706","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2739480.2754706","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019727872","display_name":"Alberto Bartoli","orcid":"https://orcid.org/0000-0003-4132-416X"},"institutions":[{"id":"https://openalex.org/I142444530","display_name":"University of Trieste","ror":"https://ror.org/02n742c10","country_code":"IT","type":"education","lineage":["https://openalex.org/I142444530"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alberto Bartoli","raw_affiliation_strings":["University of Trieste, Trieste, Italy","*University of Trieste, Trieste, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Trieste, Trieste, Italy","institution_ids":["https://openalex.org/I142444530"]},{"raw_affiliation_string":"*University of Trieste, Trieste, Italy","institution_ids":["https://openalex.org/I142444530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031604878","display_name":"Andrea De Lorenzo","orcid":"https://orcid.org/0000-0002-7628-7672"},"institutions":[{"id":"https://openalex.org/I142444530","display_name":"University of Trieste","ror":"https://ror.org/02n742c10","country_code":"IT","type":"education","lineage":["https://openalex.org/I142444530"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea De Lorenzo","raw_affiliation_strings":["University of Trieste, Trieste, Italy","*University of Trieste, Trieste, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Trieste, Trieste, Italy","institution_ids":["https://openalex.org/I142444530"]},{"raw_affiliation_string":"*University of Trieste, Trieste, Italy","institution_ids":["https://openalex.org/I142444530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074055647","display_name":"Eric Medvet","orcid":"https://orcid.org/0000-0001-5652-2113"},"institutions":[{"id":"https://openalex.org/I142444530","display_name":"University of Trieste","ror":"https://ror.org/02n742c10","country_code":"IT","type":"education","lineage":["https://openalex.org/I142444530"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Eric Medvet","raw_affiliation_strings":["DIA, University of Trieste, Italy","[DIA, University of Trieste, Italy]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DIA, University of Trieste, Italy","institution_ids":["https://openalex.org/I142444530"]},{"raw_affiliation_string":"[DIA, University of Trieste, Italy]","institution_ids":["https://openalex.org/I142444530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024227702","display_name":"Fabiano Tarlao","orcid":null},"institutions":[{"id":"https://openalex.org/I142444530","display_name":"University of Trieste","ror":"https://ror.org/02n742c10","country_code":"IT","type":"education","lineage":["https://openalex.org/I142444530"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Fabiano Tarlao","raw_affiliation_strings":["University of Trieste, Trieste, Italy","*University of Trieste, Trieste, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Trieste, Trieste, Italy","institution_ids":["https://openalex.org/I142444530"]},{"raw_affiliation_string":"*University of Trieste, Trieste, Italy","institution_ids":["https://openalex.org/I142444530"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014995636","display_name":"Marco Virgolin","orcid":"https://orcid.org/0000-0001-8905-9313"},"institutions":[{"id":"https://openalex.org/I142444530","display_name":"University of Trieste","ror":"https://ror.org/02n742c10","country_code":"IT","type":"education","lineage":["https://openalex.org/I142444530"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Virgolin","raw_affiliation_strings":["University of Trieste, Trieste, Italy","*University of Trieste, Trieste, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Trieste, Trieste, Italy","institution_ids":["https://openalex.org/I142444530"]},{"raw_affiliation_string":"*University of Trieste, Trieste, Italy","institution_ids":["https://openalex.org/I142444530"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I142444530"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.04755169,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1183","last_page":"1190"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8021571636199951},{"id":"https://openalex.org/keywords/genetic-programming","display_name":"Genetic programming","score":0.7579388618469238},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.6758270263671875},{"id":"https://openalex.org/keywords/syntax","display_name":"Syntax","score":0.6247023344039917},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6132422089576721},{"id":"https://openalex.org/keywords/grammatical-evolution","display_name":"Grammatical evolution","score":0.5604385137557983},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.5440064072608948},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5085798501968384},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.4669438600540161},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.46424755454063416},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.4035578966140747},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35202208161354065},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11450457572937012}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8021571636199951},{"id":"https://openalex.org/C110332635","wikidata":"https://www.wikidata.org/wiki/Q629498","display_name":"Genetic programming","level":2,"score":0.7579388618469238},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.6758270263671875},{"id":"https://openalex.org/C60048249","wikidata":"https://www.wikidata.org/wiki/Q37437","display_name":"Syntax","level":2,"score":0.6247023344039917},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6132422089576721},{"id":"https://openalex.org/C10906938","wikidata":"https://www.wikidata.org/wiki/Q5593687","display_name":"Grammatical evolution","level":3,"score":0.5604385137557983},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.5440064072608948},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5085798501968384},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.4669438600540161},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.46424755454063416},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.4035578966140747},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35202208161354065},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11450457572937012}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/2739480.2754706","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2739480.2754706","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation","raw_type":"proceedings-article"},{"id":"pmh:oai:arts.units.it:11368/2842879","is_oa":false,"landing_page_url":"http://hdl.handle.net/11368/2842879","pdf_url":null,"source":{"id":"https://openalex.org/S4306400480","display_name":"ArTS Archivio della ricerca di Trieste (University of Trieste https://www.units.it/)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I142444530","host_organization_name":"University of Trieste","host_organization_lineage":["https://openalex.org/I142444530"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8199999928474426,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W627888170","https://openalex.org/W1502151381","https://openalex.org/W1559171143","https://openalex.org/W1586971476","https://openalex.org/W1949548705","https://openalex.org/W1961482980","https://openalex.org/W1971339057","https://openalex.org/W1980568393","https://openalex.org/W1980614341","https://openalex.org/W1984074188","https://openalex.org/W1987538593","https://openalex.org/W1987958230","https://openalex.org/W2029304247","https://openalex.org/W2036935277","https://openalex.org/W2037968453","https://openalex.org/W2046432510","https://openalex.org/W2055579589","https://openalex.org/W2059383863","https://openalex.org/W2061615874","https://openalex.org/W2071378251","https://openalex.org/W2085911453","https://openalex.org/W2090491664","https://openalex.org/W2096693449","https://openalex.org/W2097101873","https://openalex.org/W2097960255","https://openalex.org/W2108475224","https://openalex.org/W2116159459","https://openalex.org/W2118020653","https://openalex.org/W2120437191","https://openalex.org/W2142394687","https://openalex.org/W2158669285","https://openalex.org/W2158934641","https://openalex.org/W2166197284","https://openalex.org/W2166963499","https://openalex.org/W2552183030","https://openalex.org/W3010319051","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2065481307","https://openalex.org/W2605210233","https://openalex.org/W66727908","https://openalex.org/W3006865984","https://openalex.org/W2003947101","https://openalex.org/W4385213092","https://openalex.org/W2487304978","https://openalex.org/W1608608607","https://openalex.org/W2098048287","https://openalex.org/W842810586"],"abstract_inverted_index":{"There":[0],"is":[1,22,97,117,123,182],"an":[2,89],"increasing":[3,38],"interest":[4,179],"in":[5,20,84,134,183],"the":[6,34,55,101,124,130,154],"development":[7],"of":[8,40,46,57,73,81,99,113,126,129,136,143,146,177],"techniques":[9,31],"for":[10,92],"automatic":[11],"relation":[12],"extraction":[13],"from":[14,29],"unstructured":[15],"text.":[16],"The":[17,110,140],"biomedical":[18],"domain,":[19],"particular,":[21],"a":[23,71,78,94,127,144,171],"sector":[24],"that":[25,61,96,116,149,181],"may":[26],"greatly":[27],"benefit":[28],"those":[30],"due":[32],"to":[33,175],"huge":[35],"and":[36,66,75,77,167,180],"ever":[37],"amount":[39],"scientific":[41,105],"publications":[42,106],"describing":[43],"observed":[44],"phenomena":[45],"potential":[47],"clinical":[48],"interest.":[49],"In":[50],"this":[51],"paper,":[52],"we":[53],"consider":[54],"problem":[56],"automatically":[58,152],"identifying":[59],"sentences":[60,83,103],"contain":[62],"interactions":[63],"between":[64],"genes":[65,74],"proteins,":[67],"based":[68,119],"solely":[69],"on":[70,120,163],"dictionary":[72],"proteins":[76],"small":[79],"set":[80,145],"sample":[82],"natural":[85],"language.":[86],"We":[87,159],"propose":[88],"evolutionary":[90],"technique":[91],"learning":[93],"classifier":[95],"capable":[98],"detecting":[100],"desired":[102],"within":[104],"with":[107,185],"high":[108,174],"accuracy.":[109],"key":[111],"feature":[112],"our":[114,161],"proposal,":[115],"internally":[118],"Genetic":[121],"Programming,":[122],"construction":[125],"model":[128,141],"relevant":[131],"syntax":[132],"patterns":[133],"terms":[135],"standard":[137],"part-of-speech":[138],"annotations.":[139],"consists":[142],"regular":[147],"expressions":[148],"are":[150],"learned":[151],"despite":[153],"large":[155],"alphabet":[156],"size":[157],"involved.":[158],"assess":[160],"approach":[162],"two":[164],"realistic":[165],"datasets":[166],"obtain":[168],"74%":[169],"accuracy,":[170],"value":[172],"sufficiently":[173],"be":[176],"practical":[178],"line":[184],"significant":[186],"baseline":[187],"methods.":[188]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}