{"id":"https://openalex.org/W2019313821","doi":"https://doi.org/10.1145/2739480.2754652","title":"Improving CUDA DNA Analysis Software with Genetic Programming","display_name":"Improving CUDA DNA Analysis Software with Genetic Programming","publication_year":2015,"publication_date":"2015-07-07","ids":{"openalex":"https://openalex.org/W2019313821","doi":"https://doi.org/10.1145/2739480.2754652","mag":"2019313821"},"language":"en","primary_location":{"id":"doi:10.1145/2739480.2754652","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2739480.2754652","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112258107","display_name":"William B. Langdon","orcid":null},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"William B. Langdon","raw_affiliation_strings":["University College London, London, United Kingdom"],"affiliations":[{"raw_affiliation_string":"University College London, London, United Kingdom","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023028829","display_name":"Brian Lam","orcid":"https://orcid.org/0000-0002-3638-9025"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Brian Yee Hong Lam","raw_affiliation_strings":["University of Cambridge, Cambridge, United Kingdom"],"affiliations":[{"raw_affiliation_string":"University of Cambridge, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065281209","display_name":"Justyna Petke","orcid":"https://orcid.org/0000-0002-7833-6044"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Justyna Petke","raw_affiliation_strings":["University College London, London, United Kingdom"],"affiliations":[{"raw_affiliation_string":"University College London, London, United Kingdom","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000019783","display_name":"Mark Harman","orcid":"https://orcid.org/0000-0002-5864-4488"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mark Harman","raw_affiliation_strings":["University College London, London, United Kingdom"],"affiliations":[{"raw_affiliation_string":"University College London, London, United Kingdom","institution_ids":["https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5112258107"],"corresponding_institution_ids":["https://openalex.org/I45129253"],"apc_list":null,"apc_paid":null,"fwci":11.5655,"has_fulltext":false,"cited_by_count":61,"citation_normalized_percentile":{"value":0.98409238,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"1063","last_page":"1070"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.8173178434371948},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7714247107505798},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.6177763342857361},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5970190763473511},{"id":"https://openalex.org/keywords/genetic-programming","display_name":"Genetic programming","score":0.5833118557929993},{"id":"https://openalex.org/keywords/general-purpose-computing-on-graphics-processing-units","display_name":"General-purpose computing on graphics processing units","score":0.5471030473709106},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.5252770185470581},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5104090571403503},{"id":"https://openalex.org/keywords/grammar","display_name":"Grammar","score":0.43722736835479736},{"id":"https://openalex.org/keywords/graphics-processing-unit","display_name":"Graphics processing unit","score":0.42700982093811035},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.42307135462760925},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.29876142740249634},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.28140872716903687},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.24344584345817566},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.22081777453422546},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14263343811035156},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12230652570724487},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09272736310958862}],"concepts":[{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.8173178434371948},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7714247107505798},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.6177763342857361},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5970190763473511},{"id":"https://openalex.org/C110332635","wikidata":"https://www.wikidata.org/wiki/Q629498","display_name":"Genetic programming","level":2,"score":0.5833118557929993},{"id":"https://openalex.org/C50630238","wikidata":"https://www.wikidata.org/wiki/Q971505","display_name":"General-purpose computing on graphics processing units","level":3,"score":0.5471030473709106},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.5252770185470581},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5104090571403503},{"id":"https://openalex.org/C26022165","wikidata":"https://www.wikidata.org/wiki/Q8091","display_name":"Grammar","level":2,"score":0.43722736835479736},{"id":"https://openalex.org/C2779851693","wikidata":"https://www.wikidata.org/wiki/Q183484","display_name":"Graphics processing unit","level":2,"score":0.42700982093811035},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.42307135462760925},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.29876142740249634},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28140872716903687},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.24344584345817566},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.22081777453422546},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14263343811035156},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12230652570724487},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09272736310958862},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/2739480.2754652","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2739480.2754652","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation","raw_type":"proceedings-article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1489959","is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/1489959/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"     In: Silva, S, (ed.)  (Proceedings) 17th Genetic and Evolutionary Computation Conference (GECCO). (pp. pp. 1063-1070).  ASSOC COMPUTING MACHINERY (2015)     ","raw_type":"Proceedings paper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2543103698","display_name":null,"funder_award_id":"EP/I033688/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G6794522244","display_name":null,"funder_award_id":"EP/J017515/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320309480","display_name":"Nvidia","ror":"https://ror.org/03jdj4y14"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W32282251","https://openalex.org/W53373509","https://openalex.org/W100379578","https://openalex.org/W1483736078","https://openalex.org/W1553510217","https://openalex.org/W1586648962","https://openalex.org/W1984074188","https://openalex.org/W2001936191","https://openalex.org/W2030767781","https://openalex.org/W2037748100","https://openalex.org/W2047647995","https://openalex.org/W2061781275","https://openalex.org/W2071182716","https://openalex.org/W2103441770","https://openalex.org/W2145373440","https://openalex.org/W2156728410","https://openalex.org/W2168909179","https://openalex.org/W2171476591","https://openalex.org/W2171777347","https://openalex.org/W2305591663","https://openalex.org/W3087057801","https://openalex.org/W4247053599","https://openalex.org/W6650693359"],"related_works":["https://openalex.org/W1963859303","https://openalex.org/W2364044215","https://openalex.org/W2389600408","https://openalex.org/W240129890","https://openalex.org/W3048701459","https://openalex.org/W2149078538","https://openalex.org/W2370314112","https://openalex.org/W1912958759","https://openalex.org/W2792081825","https://openalex.org/W2893308117"],"abstract_inverted_index":{"We":[0],"genetically":[1],"improve":[2],"BarraCUDA":[3],"using":[4,24,37],"a":[5,57],"BNF":[6],"grammar":[7],"incorporating":[8],"C":[9],"scoping":[10],"rules":[11],"with":[12,41],"GP.":[13],"Barracuda":[14],"maps":[15],"next":[16],"generation":[17],"DNA":[18],"sequences":[19],"to":[20],"the":[21,25],"human":[22],"genome":[23],"Burrows-Wheeler":[26],"algorithm":[27],"(BWA)":[28],"on":[29,56],"nVidia":[30],"Tesla":[31],"parallel":[32],"graphics":[33],"hardware":[34],"(GPUs).":[35],"GI":[36],"phenotypic":[38],"tabu":[39],"search":[40],"manually":[42],"grown":[43],"code":[44],"can":[45],"graft":[46],"new":[47],"features":[48],"giving":[49],"more":[50],"than":[51],"100":[52],"fold":[53],"speed":[54],"up":[55],"performance":[58],"critical":[59],"kernel":[60],"without":[61],"loss":[62],"of":[63],"accuracy.":[64]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
