{"id":"https://openalex.org/W2144119334","doi":"https://doi.org/10.1145/2702123.2702354","title":"Interactive Cloud Experimentation for Biology","display_name":"Interactive Cloud Experimentation for Biology","publication_year":2015,"publication_date":"2015-04-17","ids":{"openalex":"https://openalex.org/W2144119334","doi":"https://doi.org/10.1145/2702123.2702354","mag":"2144119334"},"language":"en","primary_location":{"id":"doi:10.1145/2702123.2702354","is_oa":true,"landing_page_url":"https://doi.org/10.1145/2702123.2702354","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/2702123.2702354?download=true","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 33rd Annual ACM Conference on Human Factors in Computing Systems","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/2702123.2702354?download=true","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003235085","display_name":"Zahid Hossain","orcid":"https://orcid.org/0000-0001-5393-9677"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zahid Hossain","raw_affiliation_strings":["Stanford University, Stanford, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026426411","display_name":"Xiaofan Jin","orcid":"https://orcid.org/0000-0002-0802-7692"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaofan Jin","raw_affiliation_strings":["Stanford University, Stanford, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040109753","display_name":"Engin Bumbacher","orcid":"https://orcid.org/0000-0002-4322-7059"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Engin W. Bumbacher","raw_affiliation_strings":["Stanford University, Stanford, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001447357","display_name":"Alice M. Chung","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alice M. Chung","raw_affiliation_strings":["Stanford University, Stanford, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061778356","display_name":"Stephen Koo","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen Koo","raw_affiliation_strings":["Stanford University, Stanford, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061542865","display_name":"Jordan David Shapiro","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jordan D. Shapiro","raw_affiliation_strings":["Stanford University, Stanford, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024082229","display_name":"Cynthia Truong","orcid":"https://orcid.org/0000-0001-6727-5744"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cynthia Y. Truong","raw_affiliation_strings":["Stanford University, Stanford, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030963373","display_name":"Sean Choi","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean Choi","raw_affiliation_strings":["Stanford University, Stanford, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001006726","display_name":"Nathan D. Orloff","orcid":"https://orcid.org/0000-0001-5391-4699"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nathan D. Orloff","raw_affiliation_strings":["Stanford University, Stanford, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065614058","display_name":"Paulo Blikstein","orcid":"https://orcid.org/0000-0003-3941-1088"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paulo Blikstein","raw_affiliation_strings":["Stanford University, Stanford, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019814011","display_name":"Ingmar H. Riedel\u2010Kruse","orcid":"https://orcid.org/0000-0002-6068-5561"},"institutions":[{"id":"https://openalex.org/I1743320","display_name":"Palo Alto University","ror":"https://ror.org/04f812k67","country_code":"US","type":"education","lineage":["https://openalex.org/I1743320"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ingmar H. Riedel-Kruse","raw_affiliation_strings":["Stanford University, Palo Alto, CA, USA","Stanford University, Palo Alto, CA USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Palo Alto, CA, USA","institution_ids":["https://openalex.org/I1743320","https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford University, Palo Alto, CA USA","institution_ids":["https://openalex.org/I1743320","https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.0925,"has_fulltext":true,"cited_by_count":37,"citation_normalized_percentile":{"value":0.91233175,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"3681","last_page":"3690"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13362","display_name":"Slime Mold and Myxomycetes Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13362","display_name":"Slime Mold and Myxomycetes Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.7972757816314697},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7346974611282349},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7249023914337158},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.6095012426376343},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.566766619682312},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.5521496534347534},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.49093034863471985},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.43608540296554565},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3947451710700989},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.3791637420654297},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.19907084107398987},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1440953016281128},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11583834886550903}],"concepts":[{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.7972757816314697},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7346974611282349},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7249023914337158},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.6095012426376343},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.566766619682312},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.5521496534347534},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.49093034863471985},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.43608540296554565},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3947451710700989},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3791637420654297},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19907084107398987},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1440953016281128},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11583834886550903},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2702123.2702354","is_oa":true,"landing_page_url":"https://doi.org/10.1145/2702123.2702354","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/2702123.2702354?download=true","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 33rd Annual ACM Conference on Human Factors in Computing Systems","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/2702123.2702354","is_oa":true,"landing_page_url":"https://doi.org/10.1145/2702123.2702354","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/2702123.2702354?download=true","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 33rd Annual ACM Conference on Human Factors in Computing Systems","raw_type":"proceedings-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5600000023841858}],"awards":[{"id":"https://openalex.org/G3173110309","display_name":null,"funder_award_id":"1055130","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4130148635","display_name":null,"funder_award_id":"1324753","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2144119334.pdf","grobid_xml":"https://content.openalex.org/works/W2144119334.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W22131516","https://openalex.org/W58785831","https://openalex.org/W359757925","https://openalex.org/W1539947443","https://openalex.org/W1672533104","https://openalex.org/W1910477057","https://openalex.org/W1965160930","https://openalex.org/W1983685300","https://openalex.org/W1997417885","https://openalex.org/W2004528414","https://openalex.org/W2006444123","https://openalex.org/W2007295025","https://openalex.org/W2032406331","https://openalex.org/W2037334456","https://openalex.org/W2037906408","https://openalex.org/W2045004201","https://openalex.org/W2048763066","https://openalex.org/W2054938875","https://openalex.org/W2073338313","https://openalex.org/W2075286470","https://openalex.org/W2081484203","https://openalex.org/W2086187432","https://openalex.org/W2088882448","https://openalex.org/W2093207209","https://openalex.org/W2111494487","https://openalex.org/W2116667569","https://openalex.org/W2118682638","https://openalex.org/W2120408680","https://openalex.org/W2122749842","https://openalex.org/W2127823730","https://openalex.org/W2132258527","https://openalex.org/W2144601949","https://openalex.org/W2155028447","https://openalex.org/W2155871507","https://openalex.org/W2156564205","https://openalex.org/W2158706178","https://openalex.org/W2162518062","https://openalex.org/W2294454284","https://openalex.org/W2325370922","https://openalex.org/W2410187377","https://openalex.org/W2503831692","https://openalex.org/W2545778708","https://openalex.org/W3037272776","https://openalex.org/W4246194774","https://openalex.org/W4252005535","https://openalex.org/W6683100946"],"related_works":["https://openalex.org/W4244478748","https://openalex.org/W4223488648","https://openalex.org/W2134969820","https://openalex.org/W2251605416","https://openalex.org/W4389340727","https://openalex.org/W3150465815","https://openalex.org/W1997222214","https://openalex.org/W2802581102","https://openalex.org/W4205786897","https://openalex.org/W2070395303"],"abstract_inverted_index":{"Interacting":[0],"with":[1,29,92,135],"biological":[2,137],"systems":[3],"via":[4],"experiments":[5,36,72,91],"is":[6,54,131],"important":[7],"for":[8,56,121,133],"academia,":[9],"industry,":[10],"and":[11,23,69,76,105,125,139,149],"education,":[12,146],"but":[13,38],"access":[14,119],"barriers":[15],"exist":[16],"due":[17],"to":[18,67,141],"training,":[19],"costs,":[20],"safety,":[21],"logistics,":[22],"spatial":[24],"separation.":[25],"High-throughput":[26],"equipment":[27],"combined":[28],"web":[30],"streaming":[31],"could":[32],"enable":[33],"interactive":[34,144],"biology":[35],"online,":[37],"no":[39],"such":[40],"platform":[41,116],"currently":[42],"exists.":[43],"We":[44,81],"present":[45],"a":[46,57,93,109],"cloud":[47,51],"experimentation":[48],"architecture":[49,87,130],"(paralleling":[50],"computation),":[52],"which":[53],"optimized":[55],"class":[58,112],"of":[59,85,108],"domain-specific":[60],"equipments":[61,140],"(biotic":[62],"processing":[63],"units":[64],"-":[65],"BPU)":[66],"share":[68],"execute":[70],"many":[71],"in":[73,101],"parallel":[74],"remotely":[75],"interactively":[77],"at":[78],"all":[79],"time.":[80],"implemented":[82],"an":[83],"instance":[84],"this":[86,115],"that":[88,114],"enables":[89,123],"chemotactic":[90],"slime":[94],"mold":[95],"Physarum":[96],"Polycephelum.":[97],"A":[98],"user":[99],"study":[100],"the":[102,118],"blended":[103],"teaching":[104],"research":[106],"setting":[107],"graduate-level":[110],"biophysics":[111],"demonstrated":[113],"lowers":[117],"barrier":[120],"non-biologists,":[122],"discovery,":[124],"facilitates":[126],"learning":[127],"analytics.":[128],"This":[129],"flexible":[132],"integration":[134],"various":[136],"specimens":[138],"facilitate":[142],"scalable":[143],"online":[145],"collaborations,":[147],"research,":[148],"citizen":[150],"science.":[151]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
