{"id":"https://openalex.org/W2086198013","doi":"https://doi.org/10.1145/2695664.2695962","title":"P-SaMI","display_name":"P-SaMI","publication_year":2015,"publication_date":"2015-04-13","ids":{"openalex":"https://openalex.org/W2086198013","doi":"https://doi.org/10.1145/2695664.2695962","mag":"2086198013"},"language":"en","primary_location":{"id":"doi:10.1145/2695664.2695962","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2695664.2695962","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 30th Annual ACM Symposium on Applied Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003910072","display_name":"Patricia H\u00fcbler","orcid":null},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Patricia H\u00fcbler","raw_affiliation_strings":["GPIN -- PPGCC -- FACIN - PUCRS, Porto Alegre, RS, Brazil"],"affiliations":[{"raw_affiliation_string":"GPIN -- PPGCC -- FACIN - PUCRS, Porto Alegre, RS, Brazil","institution_ids":["https://openalex.org/I45643870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019215692","display_name":"Duncan D. Ruiz","orcid":"https://orcid.org/0000-0002-4071-3246"},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Duncan Ruiz","raw_affiliation_strings":["GPIN -- PPGCC -- FACIN - PUCRS, Porto Alegre, RS, Brazil"],"affiliations":[{"raw_affiliation_string":"GPIN -- PPGCC -- FACIN - PUCRS, Porto Alegre, RS, Brazil","institution_ids":["https://openalex.org/I45643870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008405795","display_name":"Jo\u00e3o Eduardo Ferreira","orcid":"https://orcid.org/0000-0001-9607-2014"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Jo\u00e3o Eduardo Ferreira","raw_affiliation_strings":["DATA Group -- DC - IME - USP, S\u00e3o Paulo, SP, Brazil"],"affiliations":[{"raw_affiliation_string":"DATA Group -- DC - IME - USP, S\u00e3o Paulo, SP, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064713906","display_name":"Osmar Norberto de Souza","orcid":"https://orcid.org/0000-0002-4602-1208"},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Osmar Norberto de Souza","raw_affiliation_strings":["LABIO -- PPGCC -- FACIN - PUCRS, Porto Alegre, RS, Brazil"],"affiliations":[{"raw_affiliation_string":"LABIO -- PPGCC -- FACIN - PUCRS, Porto Alegre, RS, Brazil","institution_ids":["https://openalex.org/I45643870"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5003910072"],"corresponding_institution_ids":["https://openalex.org/I45643870"],"apc_list":null,"apc_paid":null,"fwci":0.701,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.7336233,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"54","last_page":"57"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.7662765979766846},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.7055070996284485},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6940329670906067},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.45485711097717285},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.444065123796463},{"id":"https://openalex.org/keywords/drug-design","display_name":"Drug design","score":0.4281052350997925},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.3837488889694214},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.24247968196868896},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.21020957827568054},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.09360083937644958},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08457452058792114},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07401886582374573},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.06795677542686462}],"concepts":[{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.7662765979766846},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.7055070996284485},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6940329670906067},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.45485711097717285},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.444065123796463},{"id":"https://openalex.org/C192071366","wikidata":"https://www.wikidata.org/wiki/Q2991682","display_name":"Drug design","level":2,"score":0.4281052350997925},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.3837488889694214},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.24247968196868896},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.21020957827568054},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.09360083937644958},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08457452058792114},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07401886582374573},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.06795677542686462},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2695664.2695962","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2695664.2695962","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 30th Annual ACM Symposium on Applied Computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7400000095367432}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1970658820","https://openalex.org/W1985953075","https://openalex.org/W2014375183","https://openalex.org/W2019732485","https://openalex.org/W2061007134","https://openalex.org/W2103734924","https://openalex.org/W2117610468","https://openalex.org/W2127059336","https://openalex.org/W2158534713"],"related_works":["https://openalex.org/W2059230675","https://openalex.org/W2376003823","https://openalex.org/W2773493604","https://openalex.org/W2269591907","https://openalex.org/W2027065525","https://openalex.org/W2057846043","https://openalex.org/W2093426296","https://openalex.org/W4402273478","https://openalex.org/W2594726310","https://openalex.org/W2336040088"],"abstract_inverted_index":{"Molecular":[0],"docking":[1],"(MD)":[2],"simulation":[3,64],"is":[4,65,94],"one":[5],"of":[6,10,18,39,44,103,105],"the":[7,11,16,31,48,59],"four":[8],"steps":[9],"rational":[12],"drug":[13,32],"design.":[14],"By":[15],"use":[17],"a":[19,62,70,112],"fully-flexible":[20],"receptor":[21,49],"(FFR)":[22],"model,":[23],"protein":[24],"flexibility":[25,50],"can":[26],"be":[27],"explicitly":[28],"considered":[29],"during":[30],"design":[33],"process.":[34],"FFR":[35,60,109],"models":[36],"are":[37],"composed":[38],"hundreds":[40],"to":[41,46,80,99],"several":[42],"thousands":[43],"conformations":[45],"simulate":[47],"in":[51,58,111],"cell":[52],"environments.":[53],"So,":[54],"for":[55],"each":[56],"conformation":[57],"model":[61,110],"MD":[63],"executed":[66],"and":[67],"analyzed":[68],"against":[69],"small":[71,81],"molecule.":[72],"However,":[73],"it":[74],"presents":[75],"an":[76,108],"important":[77],"challenge":[78],"due":[79],"molecules":[82],"databases,":[83],"e.g.":[84],"ZINC,":[85],"have":[86],"more":[87],"than":[88],"21":[89],"million":[90],"compounds":[91],"available.":[92],"It":[93],"computationally":[95],"very":[96],"demanding":[97],"task":[98],"perform":[100],"virtual":[101],"screening":[102],"millions":[104],"ligands":[106],"using":[107],"sequential":[113],"mode.":[114]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
