{"id":"https://openalex.org/W1988526711","doi":"https://doi.org/10.1145/2665970.2665973","title":"Systematic Identification of Context-dependent Conflicting Information in Biological Pathways","display_name":"Systematic Identification of Context-dependent Conflicting Information in Biological Pathways","publication_year":2014,"publication_date":"2014-11-03","ids":{"openalex":"https://openalex.org/W1988526711","doi":"https://doi.org/10.1145/2665970.2665973","mag":"1988526711"},"language":"en","primary_location":{"id":"doi:10.1145/2665970.2665973","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2665970.2665973","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047099815","display_name":"Seyeol Yoon","orcid":"https://orcid.org/0000-0003-4665-6331"},"institutions":[{"id":"https://openalex.org/I4210101891","display_name":"Korea Institute of Brain Science","ror":"https://ror.org/017stnw60","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210101891"]},{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Seyeol Yoon","raw_affiliation_strings":["Department of Bio and Brain Engineering, KAIST, Daejeon, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, KAIST, Daejeon, South Korea","institution_ids":["https://openalex.org/I4210101891","https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103282907","display_name":"Jin\u2010Myung Jung","orcid":"https://orcid.org/0000-0002-4962-8347"},"institutions":[{"id":"https://openalex.org/I4210101891","display_name":"Korea Institute of Brain Science","ror":"https://ror.org/017stnw60","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210101891"]},{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jinmyung Jung","raw_affiliation_strings":["Department of Bio and Brain Engineering, KAIST, Daejeon, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, KAIST, Daejeon, South Korea","institution_ids":["https://openalex.org/I4210101891","https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002000972","display_name":"Hasun Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]},{"id":"https://openalex.org/I4210101891","display_name":"Korea Institute of Brain Science","ror":"https://ror.org/017stnw60","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210101891"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hasun Yu","raw_affiliation_strings":["Department of Bio and Brain Engineering, KAIST, Daejeon, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, KAIST, Daejeon, South Korea","institution_ids":["https://openalex.org/I4210101891","https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103011138","display_name":"Mijin Kwon","orcid":"https://orcid.org/0000-0001-8977-8393"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]},{"id":"https://openalex.org/I4210101891","display_name":"Korea Institute of Brain Science","ror":"https://ror.org/017stnw60","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210101891"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Mijin Kwon","raw_affiliation_strings":["Department of Bio and Brain Engineering, KAIST, Daejeon, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, KAIST, Daejeon, South Korea","institution_ids":["https://openalex.org/I4210101891","https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009491868","display_name":"Sungji Choo","orcid":"https://orcid.org/0000-0003-2982-1868"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]},{"id":"https://openalex.org/I4210101891","display_name":"Korea Institute of Brain Science","ror":"https://ror.org/017stnw60","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210101891"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sungji Choo","raw_affiliation_strings":["Department of Bio and Brain Engineering, KAIST, Daejeon, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, KAIST, Daejeon, South Korea","institution_ids":["https://openalex.org/I4210101891","https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091441093","display_name":"Kyunghyun Park","orcid":"https://orcid.org/0000-0002-0446-7797"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kyunghyun Park","raw_affiliation_strings":["KAIST, Daejeon, South Korea","KAIST, Daejeon , South Korea#TAB#"],"affiliations":[{"raw_affiliation_string":"KAIST, Daejeon, South Korea","institution_ids":["https://openalex.org/I157485424"]},{"raw_affiliation_string":"KAIST, Daejeon , South Korea#TAB#","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101397246","display_name":"Dong-Jin Jang","orcid":"https://orcid.org/0000-0002-3612-3171"},"institutions":[{"id":"https://openalex.org/I4210101891","display_name":"Korea Institute of Brain Science","ror":"https://ror.org/017stnw60","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210101891"]},{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Dongjin Jang","raw_affiliation_strings":["Department of Bio and Brain Engineering, KAIST, Daejeon, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, KAIST, Daejeon, South Korea","institution_ids":["https://openalex.org/I4210101891","https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100452154","display_name":"Sangwoo Kim","orcid":"https://orcid.org/0000-0001-5356-0827"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sangwoo Kim","raw_affiliation_strings":["Yonsei University College of Medicine, Seoul, South Korea"],"affiliations":[{"raw_affiliation_string":"Yonsei University College of Medicine, Seoul, South Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037879375","display_name":"Doheon Lee","orcid":"https://orcid.org/0000-0001-9070-4316"},"institutions":[{"id":"https://openalex.org/I4210101891","display_name":"Korea Institute of Brain Science","ror":"https://ror.org/017stnw60","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210101891"]},{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Doheon Lee","raw_affiliation_strings":["Department of Bio and Brain Engineering, KAIST, Daejeon, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, KAIST, Daejeon, South Korea","institution_ids":["https://openalex.org/I4210101891","https://openalex.org/I157485424"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5047099815"],"corresponding_institution_ids":["https://openalex.org/I157485424","https://openalex.org/I4210101891"],"apc_list":null,"apc_paid":null,"fwci":0.1394,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.52019788,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"9","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9531999826431274,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.7029927968978882},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6568539142608643},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.6171077489852905},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5478515028953552},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5434480309486389},{"id":"https://openalex.org/keywords/dual","display_name":"Dual (grammatical number)","score":0.424709290266037},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2265510857105255},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21937018632888794},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21149587631225586},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.12271004915237427}],"concepts":[{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.7029927968978882},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6568539142608643},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.6171077489852905},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5478515028953552},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5434480309486389},{"id":"https://openalex.org/C2780980858","wikidata":"https://www.wikidata.org/wiki/Q110022","display_name":"Dual (grammatical number)","level":2,"score":0.424709290266037},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2265510857105255},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21937018632888794},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21149587631225586},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.12271004915237427},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C124952713","wikidata":"https://www.wikidata.org/wiki/Q8242","display_name":"Literature","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2665970.2665973","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2665970.2665973","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6340052926","display_name":null,"funder_award_id":"NRF-2012M3A9C4048758","funder_id":"https://openalex.org/F4320322030","funder_display_name":"Ministry of Science, ICT and Future Planning"}],"funders":[{"id":"https://openalex.org/F4320322030","display_name":"Ministry of Science, ICT and Future Planning","ror":"https://ror.org/032e49973"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4234874385","https://openalex.org/W2323648130","https://openalex.org/W2157140558","https://openalex.org/W2378782423","https://openalex.org/W2388988621","https://openalex.org/W2357797405","https://openalex.org/W2366623913","https://openalex.org/W2374905595","https://openalex.org/W2516693588","https://openalex.org/W3175202559"],"abstract_inverted_index":{"Interactions":[0],"between":[1],"biological":[2],"entities":[3],"such":[4,261],"as":[5,48,140,196,198,262],"genes,":[6],"proteins":[7],"and":[8,59,88,103,135,156,243,255,267],"metabolites,":[9],"so":[10,72],"called":[11],"pathways,":[12],"are":[13,34,119,138,238],"key":[14],"features":[15],"to":[16,184,204],"understand":[17],"molecular":[18],"mechanisms":[19],"of":[20,40,75,94,96,149,206],"life.":[21],"As":[22],"pathway":[23,80,250],"information":[24,155,158,230],"is":[25],"being":[26,141],"accumulated":[27],"rapidly":[28],"through":[29],"various":[30],"knowledge":[31],"resources,":[32],"there":[33],"growing":[35],"interests":[36],"in":[37,64,163],"maintaining":[38],"integrity":[39],"the":[41,78,116,126,132,136,164,167,192,207,245],"heterogeneous":[42],"databases.":[43],"Here,":[44],"we":[45,178,247],"defined":[46,86],"conflict":[47,69,183],"a":[49,65,122],"status":[50],"where":[51],"two":[52,97],"contradictory":[53,221],"evidences":[54],"(i.e.":[55],"'A":[56,60],"increases":[57],"B'":[58],"decreases":[61],"B')":[62],"coexist":[63],"same":[66,117,193],"pathway.":[67],"This":[68,143],"damages":[70],"unity":[71],"that":[73,146,202,219,249],"inference":[74],"simulation":[76],"on":[77,176],"integrated":[79],"network":[81,265],"might":[82,181,231],"be":[83,210,232,253],"unreliable.":[84],"We":[85,187],"rule":[87,89,92,123,133],"group.":[90,124],"A":[91],"consists":[93],"interaction":[95],"entities,":[98],"meta-relation":[99],"(increase":[100],"or":[101,109],"decrease),":[102],"contexts":[104],"terms":[105,195],"about":[106],"tissue":[107],"specificity":[108],"environmental":[110],"conditions.":[111],"The":[112],"rules,":[113,189],"which":[114,190],"have":[115,129,191],"interaction,":[118],"grouped":[120,188],"into":[121],"If":[125],"rules":[127,137],"don't":[128],"unanimous":[130],"meta-relation,":[131],"group":[134],"judged":[139],"conflicting.":[142],"analysis":[144,216],"revealed":[145,201],"almost":[147],"20%":[148],"known":[150],"interactions":[151],"suffer":[152],"from":[153],"conflicting":[154,157],"occurred":[159],"much":[160],"more":[161],"frequently":[162],"literatures":[165],"than":[166],"public":[168],"database.":[169],"With":[170],"consideration":[171],"for":[172,257],"dual":[173],"functions":[174],"depending":[175],"context,":[177],"thought":[179],"it":[180],"resolve":[182],"consider":[185],"context.":[186,214],"context":[194],"well":[197],"interaction.":[199],"It's":[200],"up":[203],"86%":[205],"conflicts":[208],"could":[209],"resolved":[211],"by":[212],"considering":[213],"Subsequent":[215],"also":[217],"showed":[218],"those":[220],"records":[222],"generally":[223],"compete":[224],"each":[225],"other":[226],"closely,":[227],"but":[228],"some":[229],"suspicious":[233],"when":[234],"their":[235],"evidence":[236],"levels":[237],"seriously":[239],"imbalanced.":[240],"By":[241],"identifying":[242],"resolving":[244],"conflicts,":[246],"expect":[248],"databases":[251],"can":[252],"cleaned":[254],"used":[256],"better":[258],"secondary":[259],"analyses":[260],"gene/protein":[263],"annotation,":[264],"dynamics":[266],"qualitative/quantitative":[268],"simulation.":[269]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
