{"id":"https://openalex.org/W1990878812","doi":"https://doi.org/10.1145/2649387.2660843","title":"The interplay of sequence conservation and T cell immune recognition","display_name":"The interplay of sequence conservation and T cell immune recognition","publication_year":2014,"publication_date":"2014-09-20","ids":{"openalex":"https://openalex.org/W1990878812","doi":"https://doi.org/10.1145/2649387.2660843","mag":"1990878812"},"language":"en","primary_location":{"id":"doi:10.1145/2649387.2660843","is_oa":true,"landing_page_url":"https://doi.org/10.1145/2649387.2660843","pdf_url":"http://dl.acm.org/ft_gateway.cfm?id=2660843&type=pdf","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://dl.acm.org/ft_gateway.cfm?id=2660843&type=pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044468428","display_name":"Anne Bresciani","orcid":"https://orcid.org/0000-0002-5144-4221"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Anne Bresciani","raw_affiliation_strings":["Technical University of Denmark, Denmark","Technical University of Denmark,Denmark)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Denmark, Denmark","institution_ids":["https://openalex.org/I96673099"]},{"raw_affiliation_string":"Technical University of Denmark,Denmark)","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063725110","display_name":"Jason Greenbaum","orcid":"https://orcid.org/0000-0002-1381-0390"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason Greenbaum","raw_affiliation_strings":["La Jolla Institute of Allergy &amp; Immunology, La Jolla, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute of Allergy &amp; Immunology, La Jolla, CA","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066674783","display_name":"Cecilia S. Lindestam Arlehamn","orcid":"https://orcid.org/0000-0001-7302-8002"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cecilia S. Lindestam Arlehamn","raw_affiliation_strings":["La Jolla Institute of Allergy &amp; Immunology, La Jolla, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute of Allergy &amp; Immunology, La Jolla, CA","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010966529","display_name":"Alessandro Sette","orcid":"https://orcid.org/0000-0001-7013-2250"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alessandro Sette","raw_affiliation_strings":["La Jolla Institute of Allergy &amp; Immunology, La Jolla, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute of Allergy &amp; Immunology, La Jolla, CA","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076702280","display_name":"Morten Nielsen","orcid":"https://orcid.org/0000-0001-7885-4311"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Morten Nielsen","raw_affiliation_strings":["Technical University of Denmark, Denmark","Technical University of Denmark,Denmark)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Denmark, Denmark","institution_ids":["https://openalex.org/I96673099"]},{"raw_affiliation_string":"Technical University of Denmark,Denmark)","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023547268","display_name":"Bjoern Peters","orcid":"https://orcid.org/0000-0002-8457-6693"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bjoern Peters","raw_affiliation_strings":["La Jolla Institute of Allergy &amp; Immunology, La Jolla, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute of Allergy &amp; Immunology, La Jolla, CA","institution_ids":["https://openalex.org/I1311191458"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.1104,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.79552303,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"739","last_page":"743"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/immunogenicity","display_name":"Immunogenicity","score":0.8503904938697815},{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.5837403535842896},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.5821203589439392},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5714966058731079},{"id":"https://openalex.org/keywords/t-cell","display_name":"T cell","score":0.5044394731521606},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.48962074518203735},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.4227217733860016},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41893577575683594},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.416553258895874},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.3245309591293335},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.31149089336395264},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15772268176078796},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.10533621907234192}],"concepts":[{"id":"https://openalex.org/C2780868878","wikidata":"https://www.wikidata.org/wiki/Q1660197","display_name":"Immunogenicity","level":3,"score":0.8503904938697815},{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.5837403535842896},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.5821203589439392},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5714966058731079},{"id":"https://openalex.org/C2776090121","wikidata":"https://www.wikidata.org/wiki/Q193529","display_name":"T cell","level":3,"score":0.5044394731521606},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.48962074518203735},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.4227217733860016},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41893577575683594},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.416553258895874},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3245309591293335},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.31149089336395264},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15772268176078796},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.10533621907234192}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/2649387.2660843","is_oa":true,"landing_page_url":"https://doi.org/10.1145/2649387.2660843","pdf_url":"http://dl.acm.org/ft_gateway.cfm?id=2660843&type=pdf","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},{"id":"pmh:oai:pure.atira.dk:publications/b4983c17-f86e-4f0a-9024-6fb4f4b80d6c","is_oa":true,"landing_page_url":"https://orbit.dtu.dk/en/publications/b4983c17-f86e-4f0a-9024-6fb4f4b80d6c","pdf_url":null,"source":{"id":"https://openalex.org/S4306400705","display_name":"Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I96673099","host_organization_name":"Technical University of Denmark","host_organization_lineage":["https://openalex.org/I96673099"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"contributionToPeriodical"}],"best_oa_location":{"id":"doi:10.1145/2649387.2660843","is_oa":true,"landing_page_url":"https://doi.org/10.1145/2649387.2660843","pdf_url":"http://dl.acm.org/ft_gateway.cfm?id=2660843&type=pdf","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.7200000286102295}],"awards":[{"id":"https://openalex.org/G5190375192","display_name":null,"funder_award_id":"HHSN272201200010C","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G6845131987","display_name":null,"funder_award_id":"HHSN272201200010C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320321594","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1990878812.pdf","grobid_xml":"https://content.openalex.org/works/W1990878812.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W2000305183","https://openalex.org/W2027189611","https://openalex.org/W2028339001","https://openalex.org/W2052554412","https://openalex.org/W2094706980","https://openalex.org/W2100350770","https://openalex.org/W2125644345","https://openalex.org/W2127814614","https://openalex.org/W2150229225","https://openalex.org/W2171571559","https://openalex.org/W2605068739","https://openalex.org/W6678991171"],"related_works":["https://openalex.org/W1581415616","https://openalex.org/W1552738310","https://openalex.org/W4250292386","https://openalex.org/W2030908446","https://openalex.org/W2470318958","https://openalex.org/W2428121789","https://openalex.org/W4205567707","https://openalex.org/W3042894437","https://openalex.org/W2403806215","https://openalex.org/W4399097685"],"abstract_inverted_index":{"Predicting":[0],"which":[1],"peptides":[2],"can":[3],"elicit":[4],"a":[5,28],"T":[6],"cell":[7],"response":[8],"(i.e.":[9],"are":[10,38],"immunogenic)":[11],"is":[12,22,27],"of":[13],"great":[14],"importance":[15],"for":[16,31],"many":[17],"immunological":[18],"studies.":[19],"While":[20],"it":[21],"clear":[23],"that":[24,37],"MHC":[25],"binding":[26],"necessary":[29],"requirement":[30],"peptide":[32],"immunogenicity,":[33],"other":[34],"variables":[35],"exist":[36],"incompletely":[39],"understood.":[40]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
