{"id":"https://openalex.org/W1984100169","doi":"https://doi.org/10.1145/2649387.2660802","title":"Graph methods for protein-nucleotide interactions","display_name":"Graph methods for protein-nucleotide interactions","publication_year":2014,"publication_date":"2014-09-20","ids":{"openalex":"https://openalex.org/W1984100169","doi":"https://doi.org/10.1145/2649387.2660802","mag":"1984100169"},"language":"en","primary_location":{"id":"doi:10.1145/2649387.2660802","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2649387.2660802","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100871727","display_name":"Changhui Yan","orcid":"https://orcid.org/0000-0003-3048-8628"},"institutions":[{"id":"https://openalex.org/I57328836","display_name":"North Dakota State University","ror":"https://ror.org/05h1bnb22","country_code":"US","type":"education","lineage":["https://openalex.org/I57328836"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Changhui Yan","raw_affiliation_strings":["North Dakota State University, Fargo, ND"],"affiliations":[{"raw_affiliation_string":"North Dakota State University, Fargo, ND","institution_ids":["https://openalex.org/I57328836"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027972648","display_name":"Wen Cheng","orcid":null},"institutions":[{"id":"https://openalex.org/I57328836","display_name":"North Dakota State University","ror":"https://ror.org/05h1bnb22","country_code":"US","type":"education","lineage":["https://openalex.org/I57328836"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wen Cheng","raw_affiliation_strings":["North Dakota State University, Fargo, ND"],"affiliations":[{"raw_affiliation_string":"North Dakota State University, Fargo, ND","institution_ids":["https://openalex.org/I57328836"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100871727"],"corresponding_institution_ids":["https://openalex.org/I57328836"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.05783082,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"614","last_page":"614"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10171","display_name":"Biofuel production and bioconversion","score":0.9711999893188477,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5721828937530518},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.539214015007019},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4995894432067871},{"id":"https://openalex.org/keywords/surface-protein","display_name":"Surface protein","score":0.43795424699783325},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.37956321239471436},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2735692858695984}],"concepts":[{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5721828937530518},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.539214015007019},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4995894432067871},{"id":"https://openalex.org/C3019232848","wikidata":"https://www.wikidata.org/wiki/Q29548","display_name":"Surface protein","level":2,"score":0.43795424699783325},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.37956321239471436},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2735692858695984},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2649387.2660802","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2649387.2660802","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W1837502840"],"abstract_inverted_index":{"Protein-nucleotide":[0],"interactions":[1],"play":[2],"important":[3],"roles":[4],"in":[5],"many":[6],"biological":[7],"processes.":[8],"The":[9],"goal":[10],"of":[11,32,70],"our":[12],"research":[13],"is":[14],"to":[15,19,41,66,83],"develop":[16,63],"computational":[17],"methods":[18,82],"discovery":[20],"patterns":[21,37,86],"on":[22,46,58,72],"protein":[23,47,59,73],"structures":[24,48],"that":[25],"associated":[26],"with":[27,88],"the":[28,33,50,68,85],"affinity":[29,52],"and":[30,49,53,75,79],"specificity":[31],"protein-nucleotide":[34],"interactions.":[35],"These":[36],"can":[38],"be":[39],"used":[40],"predict":[42],"nucleotide":[43],"binding":[44,51],"sites":[45],"will":[54],"have":[55],"profound":[56],"impact":[57],"structure":[60],"engineering.":[61],"We":[62],"graph":[64,77,81],"representations":[65],"capture":[67],"distribution":[69],"features":[71],"surface":[74],"use":[76],"kernels":[78],"other":[80],"discover":[84],"associate":[87],"binding.":[89]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
