{"id":"https://openalex.org/W1990982290","doi":"https://doi.org/10.1145/2649387.2649439","title":"omniClassifier","display_name":"omniClassifier","publication_year":2014,"publication_date":"2014-09-20","ids":{"openalex":"https://openalex.org/W1990982290","doi":"https://doi.org/10.1145/2649387.2649439","mag":"1990982290","pmid":"https://pubmed.ncbi.nlm.nih.gov/27532062"},"language":"en","primary_location":{"id":"doi:10.1145/2649387.2649439","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2649387.2649439","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074230084","display_name":"John H. Phan","orcid":"https://orcid.org/0000-0002-4670-2660"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John H. Phan","raw_affiliation_strings":["Emory University, Atlanta, GA","Emory university, Atlanta, GA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Emory University, Atlanta, GA","institution_ids":["https://openalex.org/I150468666"]},{"raw_affiliation_string":"Emory university, Atlanta, GA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111775666","display_name":"Sonal Kothari","orcid":null},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sonal Kothari","raw_affiliation_strings":["Emory University, Atlanta, GA","Emory university, Atlanta, GA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Emory University, Atlanta, GA","institution_ids":["https://openalex.org/I150468666"]},{"raw_affiliation_string":"Emory university, Atlanta, GA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030096887","display_name":"May D. Wang","orcid":"https://orcid.org/0000-0003-3961-3608"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"May D. Wang","raw_affiliation_strings":["Emory University, Atlanta, GA","Emory university, Atlanta, GA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Emory University, Atlanta, GA","institution_ids":["https://openalex.org/I150468666"]},{"raw_affiliation_string":"Emory university, Atlanta, GA","institution_ids":["https://openalex.org/I150468666"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.06466598,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"2014","issue":null,"first_page":"514","last_page":"523"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8469591736793518},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7472774982452393},{"id":"https://openalex.org/keywords/grid-computing","display_name":"Grid computing","score":0.7195503115653992},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.6873259544372559},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.6783937215805054},{"id":"https://openalex.org/keywords/middleware","display_name":"Middleware (distributed applications)","score":0.5900375247001648},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.5760951042175293},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.5609945058822632},{"id":"https://openalex.org/keywords/utility-computing","display_name":"Utility computing","score":0.4592755436897278},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36351868510246277},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.327506959438324},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.28778207302093506},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2727391719818115}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8469591736793518},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7472774982452393},{"id":"https://openalex.org/C70429105","wikidata":"https://www.wikidata.org/wiki/Q249999","display_name":"Grid computing","level":3,"score":0.7195503115653992},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.6873259544372559},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.6783937215805054},{"id":"https://openalex.org/C169468491","wikidata":"https://www.wikidata.org/wiki/Q146923","display_name":"Middleware (distributed applications)","level":2,"score":0.5900375247001648},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.5760951042175293},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.5609945058822632},{"id":"https://openalex.org/C85106507","wikidata":"https://www.wikidata.org/wiki/Q1188445","display_name":"Utility computing","level":4,"score":0.4592755436897278},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36351868510246277},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.327506959438324},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.28778207302093506},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2727391719818115},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C184842701","wikidata":"https://www.wikidata.org/wiki/Q370563","display_name":"Cloud computing security","level":3,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/2649387.2649439","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2649387.2649439","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},{"id":"pmid:27532062","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27532062","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":null},{"id":"pmh:oai:europepmc.org:3945114","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4983434","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6399999856948853,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G7248761759","display_name":null,"funder_award_id":"NHLBI 5U01HL080711","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8611866258","display_name":null,"funder_award_id":"U54CA119338, 1RC2CA148265","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320306352","display_name":"Georgia Cancer Coalition","ror":"https://ror.org/0009gvn90"},{"id":"https://openalex.org/F4320307760","display_name":"Hewlett-Packard Development Company","ror":"https://ror.org/059rn9488"},{"id":"https://openalex.org/F4320308943","display_name":"Microsoft Research","ror":"https://ror.org/00d0nc645"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W1417555467","https://openalex.org/W1510939964","https://openalex.org/W1571024744","https://openalex.org/W1607267312","https://openalex.org/W1673352269","https://openalex.org/W1963973822","https://openalex.org/W1968805397","https://openalex.org/W1973461855","https://openalex.org/W1982203054","https://openalex.org/W1994927185","https://openalex.org/W1996667997","https://openalex.org/W2012435615","https://openalex.org/W2013968993","https://openalex.org/W2016200167","https://openalex.org/W2021560851","https://openalex.org/W2026791237","https://openalex.org/W2035421116","https://openalex.org/W2039991884","https://openalex.org/W2043235003","https://openalex.org/W2061759127","https://openalex.org/W2077562320","https://openalex.org/W2082833890","https://openalex.org/W2095776265","https://openalex.org/W2103363198","https://openalex.org/W2107956883","https://openalex.org/W2114100262","https://openalex.org/W2117395419","https://openalex.org/W2117897405","https://openalex.org/W2118017676","https://openalex.org/W2118413367","https://openalex.org/W2119014749","https://openalex.org/W2120448874","https://openalex.org/W2131987814","https://openalex.org/W2134130620","https://openalex.org/W2141007997","https://openalex.org/W2142863519","https://openalex.org/W2153635508","https://openalex.org/W2157795344","https://openalex.org/W2159400887","https://openalex.org/W2159478099","https://openalex.org/W2162041888","https://openalex.org/W2579533973","https://openalex.org/W2797563284","https://openalex.org/W2963021650","https://openalex.org/W2997591727","https://openalex.org/W3098663077","https://openalex.org/W3100712163","https://openalex.org/W3210232381","https://openalex.org/W4294107304","https://openalex.org/W4310299640","https://openalex.org/W6803376173"],"related_works":["https://openalex.org/W2149470664","https://openalex.org/W2337331320","https://openalex.org/W2162974494","https://openalex.org/W2359083166","https://openalex.org/W1585052355","https://openalex.org/W4297792185","https://openalex.org/W4322712946","https://openalex.org/W2038726588","https://openalex.org/W2125771852","https://openalex.org/W2363418456"],"abstract_inverted_index":{"Robust":[0],"prediction":[1,17,108,172],"models":[2,18,26],"are":[3],"important":[4],"for":[5,15,117,142,166],"numerous":[6],"science,":[7],"engineering,":[8],"and":[9,93,168],"biomedical":[10],"applications.":[11],"However,":[12],"best-practice":[13],"procedures":[14],"optimizing":[16],"can":[19,86,178],"be":[20,179],"computationally":[21],"complex,":[22],"especially":[23],"when":[24],"choosing":[25],"from":[27],"among":[28],"hundreds":[29],"or":[30],"thousands":[31],"of":[32,43,52,65,76,125,164,176],"parameter":[33],"choices.":[34],"Computational":[35],"complexity":[36],"has":[37],"further":[38],"increased":[39],"with":[40,49,81,114],"the":[41,50,62,123,138,161],"growth":[42],"data":[44],"in":[45],"these":[46],"fields,":[47],"concurrent":[48],"era":[51],"\"Big":[53],"Data\".":[54],"Grid":[55],"computing":[56,84,100,135],"is":[57,129],"a":[58,106,115,132],"potential":[59,162],"solution":[60],"to":[61,90,98,149,159],"computational":[63],"challenges":[64],"Big":[66,170],"Data.":[67],"Desktop":[68],"grid":[69,134],"computing,":[70],"which":[71],"uses":[72],"idle":[73],"CPU":[74],"cycles":[75],"commodity":[77],"desktop":[78,133],"machines,":[79],"coupled":[80],"commercial":[82],"cloud":[83],"resources":[85],"enable":[87],"research":[88,121],"labs":[89],"gain":[91],"easier":[92],"more":[94],"cost":[95],"effective":[96],"access":[97],"vast":[99],"resources.":[101],"We":[102],"have":[103],"developed":[104],"omniClassifier,":[105],"multi-purpose":[107],"modeling":[109],"application":[110],"that":[111],"provides":[112],"researchers":[113],"tool":[116],"conducting":[118],"machine":[119],"learning":[120],"within":[122],"guidelines":[124],"recommended":[126],"best-practices.":[127],"omniClassifier":[128,165,177],"implemented":[130],"as":[131],"system":[136],"using":[137],"Berkeley":[139],"Open":[140],"Infrastructure":[141],"Network":[143],"Computing":[144],"(BOINC)":[145],"middleware.":[146],"In":[147],"addition":[148],"describing":[150],"implementation":[151],"details,":[152],"we":[153],"use":[154],"various":[155],"gene":[156],"expression":[157],"datasets":[158],"demonstrate":[160],"scalability":[163],"efficient":[167],"robust":[169],"Data":[171],"modeling.":[173],"A":[174],"prototype":[175],"accessed":[180],"at":[181],"http://omniclassifier.bme.gatech.edu/.":[182]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2016-06-24T00:00:00"}
