{"id":"https://openalex.org/W1998304561","doi":"https://doi.org/10.1145/2649387.2649416","title":"Large highly connected clusters in protein-protein interaction networks","display_name":"Large highly connected clusters in protein-protein interaction networks","publication_year":2014,"publication_date":"2014-09-20","ids":{"openalex":"https://openalex.org/W1998304561","doi":"https://doi.org/10.1145/2649387.2649416","mag":"1998304561"},"language":"en","primary_location":{"id":"doi:10.1145/2649387.2649416","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2649387.2649416","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057273619","display_name":"Suzanne Renick Gallagher","orcid":null},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suzanne Renick Gallagher","raw_affiliation_strings":["University of Colorado, Boulder, CO","University of Colorado, Boulder, CO,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Colorado, Boulder, CO","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"University of Colorado, Boulder, CO,","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091405758","display_name":"Debra S. Goldberg","orcid":null},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Debra S. Goldberg","raw_affiliation_strings":["University of Colorado, Boulder, CO","University of Colorado, Boulder, CO,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Colorado, Boulder, CO","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"University of Colorado, Boulder, CO,","institution_ids":["https://openalex.org/I188538660"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I188538660"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.06784761,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"390","last_page":"399"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9068999886512756,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/vertex","display_name":"Vertex (graph theory)","score":0.5975370407104492},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5539876818656921},{"id":"https://openalex.org/keywords/enhanced-data-rates-for-gsm-evolution","display_name":"Enhanced Data Rates for GSM Evolution","score":0.5411675572395325},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.4776226878166199},{"id":"https://openalex.org/keywords/multiple-edges","display_name":"Multiple edges","score":0.44011226296424866},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4275932312011719},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.38175874948501587},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.09003561735153198}],"concepts":[{"id":"https://openalex.org/C80899671","wikidata":"https://www.wikidata.org/wiki/Q1304193","display_name":"Vertex (graph theory)","level":3,"score":0.5975370407104492},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5539876818656921},{"id":"https://openalex.org/C162307627","wikidata":"https://www.wikidata.org/wiki/Q204833","display_name":"Enhanced Data Rates for GSM Evolution","level":2,"score":0.5411675572395325},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.4776226878166199},{"id":"https://openalex.org/C103257674","wikidata":"https://www.wikidata.org/wiki/Q6934937","display_name":"Multiple edges","level":3,"score":0.44011226296424866},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4275932312011719},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.38175874948501587},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.09003561735153198}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2649387.2649416","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2649387.2649416","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4049899539","display_name":null,"funder_award_id":"MCB 0630250, DGE 0841423","funder_id":"https://openalex.org/F4320337397","funder_display_name":"Division of Molecular and Cellular Biosciences"},{"id":"https://openalex.org/G7500914650","display_name":null,"funder_award_id":"MCB 0630250, DGE 0841423","funder_id":"https://openalex.org/F4320337368","funder_display_name":"Division of Graduate Education"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337368","display_name":"Division of Graduate Education","ror":"https://ror.org/00whkrf32"},{"id":"https://openalex.org/F4320337397","display_name":"Division of Molecular and Cellular Biosciences","ror":"https://ror.org/002jdaq33"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":46,"referenced_works":["https://openalex.org/W29385459","https://openalex.org/W177104057","https://openalex.org/W976211528","https://openalex.org/W1499476884","https://openalex.org/W1564479627","https://openalex.org/W1589640109","https://openalex.org/W1771019176","https://openalex.org/W1969169667","https://openalex.org/W1979392998","https://openalex.org/W1988496202","https://openalex.org/W2000503761","https://openalex.org/W2012287357","https://openalex.org/W2024529797","https://openalex.org/W2040411864","https://openalex.org/W2041806373","https://openalex.org/W2047820333","https://openalex.org/W2054145937","https://openalex.org/W2057463094","https://openalex.org/W2060525409","https://openalex.org/W2063389953","https://openalex.org/W2067571661","https://openalex.org/W2075900721","https://openalex.org/W2082565035","https://openalex.org/W2090422756","https://openalex.org/W2100585269","https://openalex.org/W2108684514","https://openalex.org/W2111332454","https://openalex.org/W2112424442","https://openalex.org/W2113479286","https://openalex.org/W2122836610","https://openalex.org/W2124354935","https://openalex.org/W2132877659","https://openalex.org/W2136850043","https://openalex.org/W2140280811","https://openalex.org/W2148043260","https://openalex.org/W2152495216","https://openalex.org/W2160699408","https://openalex.org/W2163485494","https://openalex.org/W2165533101","https://openalex.org/W2313828007","https://openalex.org/W2798588639","https://openalex.org/W4247278211","https://openalex.org/W4404877915","https://openalex.org/W6601213962","https://openalex.org/W6637971194","https://openalex.org/W6676863429"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2980963558","https://openalex.org/W1882246857","https://openalex.org/W3103304230","https://openalex.org/W3111310291","https://openalex.org/W2550785055","https://openalex.org/W2151370292","https://openalex.org/W1996149838","https://openalex.org/W2032378868","https://openalex.org/W4205475737"],"abstract_inverted_index":{"The":[0],"edge":[1,49,68,88,103],"(vertex)":[2],"connectivity":[3,111],"of":[4,11,27,38,59,76,84,96],"a":[5,28,81,99],"graph":[6,29],"is":[7,23,54,70],"the":[8,20,36,57,65,74,94,102,110],"minimum":[9],"number":[10,58,75,95],"edges":[12],"(vertices)":[13],"that":[14,52],"must":[15],"be":[16,80],"removed":[17],"to":[18,106,113],"disconnect":[19],"graph.":[21],"Connectivity":[22,46,78],"an":[24],"important":[25],"property":[26],"but":[30,109],"has":[31],"seldom":[32],"been":[33],"used":[34],"in":[35,51,64,90,98],"study":[37],"protein-protein":[39],"interaction":[40],"(PPI)":[41],"and":[42],"other":[43],"biological":[44],"networks.":[45],"differs":[47],"from":[48],"density":[50,69,104],"it":[53],"based":[55,71],"on":[56,73],"paths":[60],"between":[61],"all":[62],"vertices":[63,97],"graph,":[66],"while":[67],"solely":[72],"edges.":[77],"may":[79],"better":[82],"indicator":[83],"large":[85],"clusters":[86],"than":[87],"density:":[89],"real-world":[91],"networks,":[92],"as":[93],"cluster":[100],"increases,":[101],"tends":[105,112],"decrease":[107],"rapidly,":[108],"remain":[114],"constant.":[115]},"counts_by_year":[],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
