{"id":"https://openalex.org/W2065006519","doi":"https://doi.org/10.1145/2649387.2649395","title":"Mining massive SNP data for identifying associated SNPs and uncovering gene relationships","display_name":"Mining massive SNP data for identifying associated SNPs and uncovering gene relationships","publication_year":2014,"publication_date":"2014-09-20","ids":{"openalex":"https://openalex.org/W2065006519","doi":"https://doi.org/10.1145/2649387.2649395","mag":"2065006519"},"language":"en","primary_location":{"id":"doi:10.1145/2649387.2649395","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2649387.2649395","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075965119","display_name":"Amy Webb","orcid":"https://orcid.org/0000-0001-5503-7300"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Amy Webb","raw_affiliation_strings":["The Ohio State University, Columbus, OH","The Ohio State University, Columbus (OH)#TAB#"],"affiliations":[{"raw_affiliation_string":"The Ohio State University, Columbus, OH","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"The Ohio State University, Columbus (OH)#TAB#","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111647346","display_name":"Aaron Albin","orcid":null},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aaron Albin","raw_affiliation_strings":["The Ohio State University, Columbus, OH","The Ohio State University, Columbus (OH)#TAB#"],"affiliations":[{"raw_affiliation_string":"The Ohio State University, Columbus, OH","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"The Ohio State University, Columbus (OH)#TAB#","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101564618","display_name":"Zhan Ye","orcid":"https://orcid.org/0000-0002-0426-0382"},"institutions":[{"id":"https://openalex.org/I1315135799","display_name":"Marshfield Clinic","ror":"https://ror.org/025chrz76","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1315135799"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhan Ye","raw_affiliation_strings":["Biomedical Informatics Research Center, Marshfield Clinic Research Foundation, WI"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Research Center, Marshfield Clinic Research Foundation, WI","institution_ids":["https://openalex.org/I1315135799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023661219","display_name":"Majid Rastegar-Mojarad","orcid":"https://orcid.org/0000-0001-6962-3554"},"institutions":[{"id":"https://openalex.org/I1315135799","display_name":"Marshfield Clinic","ror":"https://ror.org/025chrz76","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1315135799"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Majid Rastegar-Mojarad","raw_affiliation_strings":["Biomedical Informatics Research Center, Marshfield Clinic Research Foundation, WI"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Research Center, Marshfield Clinic Research Foundation, WI","institution_ids":["https://openalex.org/I1315135799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057366605","display_name":"Kun Huang","orcid":"https://orcid.org/0000-0002-8530-370X"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kun Huang","raw_affiliation_strings":["The Ohio State University, Columbus, OH","The Ohio State University, Columbus (OH)#TAB#"],"affiliations":[{"raw_affiliation_string":"The Ohio State University, Columbus, OH","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"The Ohio State University, Columbus (OH)#TAB#","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023251641","display_name":"Jeffrey D. Parvin","orcid":"https://orcid.org/0000-0001-5616-1928"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey Parvin","raw_affiliation_strings":["The Ohio State University, Columbus, OH","The Ohio State University, Columbus (OH)#TAB#"],"affiliations":[{"raw_affiliation_string":"The Ohio State University, Columbus, OH","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"The Ohio State University, Columbus (OH)#TAB#","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062174660","display_name":"Wolfgang Sad\u00e9e","orcid":"https://orcid.org/0000-0003-1894-6374"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wolfgang Sadee","raw_affiliation_strings":["The Ohio State University, Columbus, OH","The Ohio State University, Columbus (OH)#TAB#"],"affiliations":[{"raw_affiliation_string":"The Ohio State University, Columbus, OH","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"The Ohio State University, Columbus (OH)#TAB#","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100383618","display_name":"Lang Li","orcid":"https://orcid.org/0000-0002-5334-8719"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lang Li","raw_affiliation_strings":["Indiana University, Indianapolis, IN"],"affiliations":[{"raw_affiliation_string":"Indiana University, Indianapolis, IN","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111991056","display_name":"Simon Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I1315135799","display_name":"Marshfield Clinic","ror":"https://ror.org/025chrz76","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1315135799"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Simon Lin","raw_affiliation_strings":["Biomedical Informatics Research Center, Marshfield Clinic Research Foundation, WI"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Research Center, Marshfield Clinic Research Foundation, WI","institution_ids":["https://openalex.org/I1315135799"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5105231932","display_name":"Yang Xiang","orcid":"https://orcid.org/0009-0001-7401-9519"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yang Xiang","raw_affiliation_strings":["The Ohio State University, Columbus, OH","The Ohio State University, Columbus (OH)#TAB#"],"affiliations":[{"raw_affiliation_string":"The Ohio State University, Columbus, OH","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"The Ohio State University, Columbus (OH)#TAB#","institution_ids":["https://openalex.org/I52357470"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5075965119"],"corresponding_institution_ids":["https://openalex.org/I52357470"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09159774,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"304","last_page":"313"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.8878709077835083},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.8254545331001282},{"id":"https://openalex.org/keywords/tag-snp","display_name":"Tag SNP","score":0.6428958773612976},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.6240635514259338},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5276162624359131},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5122513175010681},{"id":"https://openalex.org/keywords/snp-array","display_name":"SNP array","score":0.49271658062934875},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42544764280319214},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4069388508796692},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.11449640989303589}],"concepts":[{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.8878709077835083},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.8254545331001282},{"id":"https://openalex.org/C55060382","wikidata":"https://www.wikidata.org/wiki/Q7675093","display_name":"Tag SNP","level":5,"score":0.6428958773612976},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.6240635514259338},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5276162624359131},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5122513175010681},{"id":"https://openalex.org/C122060243","wikidata":"https://www.wikidata.org/wiki/Q7391885","display_name":"SNP array","level":5,"score":0.49271658062934875},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42544764280319214},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4069388508796692},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.11449640989303589}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2649387.2649395","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2649387.2649395","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1819784792","display_name":null,"funder_award_id":"DBI-1262469","funder_id":"https://openalex.org/F4320337398","funder_display_name":"Division of Biological Infrastructure"},{"id":"https://openalex.org/G3169122492","display_name":null,"funder_award_id":"U01GM092655","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8999066121","display_name":null,"funder_award_id":"UL1TR000427","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337398","display_name":"Division of Biological Infrastructure","ror":"https://ror.org/04qn9mx93"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W96723709","https://openalex.org/W1542978828","https://openalex.org/W1786104672","https://openalex.org/W1822695366","https://openalex.org/W1974323803","https://openalex.org/W1996197535","https://openalex.org/W2001320379","https://openalex.org/W2009969871","https://openalex.org/W2014469644","https://openalex.org/W2025306791","https://openalex.org/W2033201031","https://openalex.org/W2036145773","https://openalex.org/W2060261318","https://openalex.org/W2061008984","https://openalex.org/W2063575312","https://openalex.org/W2071947153","https://openalex.org/W2107916366","https://openalex.org/W2110549414","https://openalex.org/W2111164126","https://openalex.org/W2113105800","https://openalex.org/W2117446594","https://openalex.org/W2124066753","https://openalex.org/W2124649657","https://openalex.org/W2126605271","https://openalex.org/W2129016541","https://openalex.org/W2135732313","https://openalex.org/W2137503082","https://openalex.org/W2140190241","https://openalex.org/W2146777736","https://openalex.org/W2150718242","https://openalex.org/W2151979140","https://openalex.org/W2155321856","https://openalex.org/W2156866331","https://openalex.org/W2158822573","https://openalex.org/W2159257592","https://openalex.org/W6659419559","https://openalex.org/W6680704940"],"related_works":["https://openalex.org/W1978000554","https://openalex.org/W2583457094","https://openalex.org/W2415959690","https://openalex.org/W2745006295","https://openalex.org/W2057218249","https://openalex.org/W2255966682","https://openalex.org/W2410422322","https://openalex.org/W2047365082","https://openalex.org/W2388756488","https://openalex.org/W2329144129"],"abstract_inverted_index":{"Studies":[0],"on":[1,7,10,16,115],"SNP":[2,48,87,105,109,118,135,158],"correlations":[3],"have":[4],"been":[5],"focused":[6],"SNPs":[8,15,28,55,78,146],"located":[9],"the":[11,45,73,116,141,165],"same":[12],"chromosome":[13,122],"since":[14],"different":[17,41],"chromosomes":[18],"are":[19],"expected":[20],"to":[21,53,71,95,103,132,177],"segregate":[22],"randomly.":[23],"Previous":[24],"studies":[25],"suggest":[26,161],"that":[27,56,127],"can":[29],"be":[30],"associated":[31,77,145],"with":[32],"each":[33],"other":[34],"over":[35],"long":[36],"distances":[37],"and":[38,69,79,92,120,168,173],"even":[39],"across":[40,137],"chromosomes.":[42,139,156],"To":[43],"facilitate":[44],"study":[46,72],"of":[47,62,65,84,144,152],"associations,":[49],"our":[50,113,128,149],"goal":[51],"is":[52,89,130],"find":[54,133],"coexist":[57],"in":[58],"a":[59],"significant":[60],"number":[61],"samples":[63],"regardless":[64],"their":[66],"genomic":[67],"distance,":[68],"subsequently":[70],"relationships":[74,163],"among":[75,164],"these":[76],"corresponding":[80,166,178],"genes.":[81,179],"This":[82],"problem":[83],"mining":[85,100],"co-occurrent":[86],"associations":[88,106,136,159],"computationally":[90],"challenging":[91],"motivates":[93],"us":[94],"design":[96],"an":[97],"efficient":[98],"data":[99,119],"algorithm":[101],"FCIRC":[102],"mine":[104],"from":[107],"massive":[108],"data.":[110],"By":[111],"applying":[112],"method":[114,129],"original":[117],"random":[121],"permutation":[123],"data,":[124],"we":[125],"demonstrate":[126],"able":[131],"non-random":[134],"multiple":[138,155],"Among":[140],"large":[142],"amount":[143],"identified":[147],"by":[148],"method,":[150],"many":[151],"them":[153],"involve":[154],"Some":[157],"also":[160],"novel":[162],"genes,":[167],"some":[169],"may":[170],"imply":[171],"biological":[172],"disease":[174],"mechanisms":[175],"related":[176]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
