{"id":"https://openalex.org/W2057591841","doi":"https://doi.org/10.1145/2649387.2649393","title":"Automated ranking of stem cell colonies by translating biological rules to computational models","display_name":"Automated ranking of stem cell colonies by translating biological rules to computational models","publication_year":2014,"publication_date":"2014-09-20","ids":{"openalex":"https://openalex.org/W2057591841","doi":"https://doi.org/10.1145/2649387.2649393","mag":"2057591841"},"language":"en","primary_location":{"id":"doi:10.1145/2649387.2649393","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2649387.2649393","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059901229","display_name":"Adele P. Peskin","orcid":"https://orcid.org/0000-0003-4913-5566"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Adele Peskin","raw_affiliation_strings":["NIST, Boulder, CO"],"affiliations":[{"raw_affiliation_string":"NIST, Boulder, CO","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018315856","display_name":"Steven P. Lund","orcid":"https://orcid.org/0000-0002-5638-3309"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Steve Lund","raw_affiliation_strings":["NIST, Gaithersburg, MD","NIST., Gaithersburg, MD"],"affiliations":[{"raw_affiliation_string":"NIST, Gaithersburg, MD","institution_ids":[]},{"raw_affiliation_string":"NIST., Gaithersburg, MD","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058440761","display_name":"Ya-Shian Li-Baboud","orcid":"https://orcid.org/0000-0003-3234-4345"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ya-Shian Li-Baboud","raw_affiliation_strings":["NIST, Gaithersburg, MD","NIST., Gaithersburg, MD"],"affiliations":[{"raw_affiliation_string":"NIST, Gaithersburg, MD","institution_ids":[]},{"raw_affiliation_string":"NIST., Gaithersburg, MD","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025865534","display_name":"Michael Halter","orcid":"https://orcid.org/0000-0002-1628-324X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michael Halter","raw_affiliation_strings":["NIST, Gaithersburg, MD","NIST., Gaithersburg, MD"],"affiliations":[{"raw_affiliation_string":"NIST, Gaithersburg, MD","institution_ids":[]},{"raw_affiliation_string":"NIST., Gaithersburg, MD","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015219111","display_name":"Anne L. Plant","orcid":"https://orcid.org/0000-0002-8538-401X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Anne Plant","raw_affiliation_strings":["NIST, Gaithersburg, MD","NIST., Gaithersburg, MD"],"affiliations":[{"raw_affiliation_string":"NIST, Gaithersburg, MD","institution_ids":[]},{"raw_affiliation_string":"NIST., Gaithersburg, MD","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015678162","display_name":"Peter Bajcsy","orcid":"https://orcid.org/0000-0002-6968-2615"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Peter Bajcsy","raw_affiliation_strings":["NIST, Gaithersburg, MD","NIST., Gaithersburg, MD"],"affiliations":[{"raw_affiliation_string":"NIST, Gaithersburg, MD","institution_ids":[]},{"raw_affiliation_string":"NIST., Gaithersburg, MD","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5059901229"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.05288098,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"13","last_page":"22"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.9842000007629395,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.6616419553756714},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6397661566734314},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6134316921234131},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.5568196773529053},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5251462459564209},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5132553577423096},{"id":"https://openalex.org/keywords/automation","display_name":"Automation","score":0.5048676133155823},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4930374324321747},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.45828714966773987},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4218723177909851},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.40976572036743164},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4085182547569275},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3654814660549164},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3383973240852356},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15548264980316162},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.13091295957565308}],"concepts":[{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.6616419553756714},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6397661566734314},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6134316921234131},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.5568196773529053},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5251462459564209},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5132553577423096},{"id":"https://openalex.org/C115901376","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automation","level":2,"score":0.5048676133155823},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4930374324321747},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.45828714966773987},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4218723177909851},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.40976572036743164},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4085182547569275},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3654814660549164},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3383973240852356},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15548264980316162},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.13091295957565308},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2649387.2649393","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2649387.2649393","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332178","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W203399641","https://openalex.org/W1444168786","https://openalex.org/W1987869189","https://openalex.org/W1993022127","https://openalex.org/W2040884411","https://openalex.org/W2097106406","https://openalex.org/W2102831150","https://openalex.org/W2119387367","https://openalex.org/W2130949063","https://openalex.org/W2148633389","https://openalex.org/W2154053567","https://openalex.org/W2162619882","https://openalex.org/W2167279371"],"related_works":["https://openalex.org/W2188500270","https://openalex.org/W2303858293","https://openalex.org/W2915512527","https://openalex.org/W51364034","https://openalex.org/W2793336762","https://openalex.org/W2091548507","https://openalex.org/W2368816706","https://openalex.org/W3159414774","https://openalex.org/W3160516639","https://openalex.org/W1522196789"],"abstract_inverted_index":{"This":[0],"paper":[1],"addresses":[2],"the":[3,17,45,51,69,78,91,132,162,186],"problem":[4],"of":[5,25,50,71,80,93,120,139,156,164,167,172],"automating":[6,125],"an":[7,102],"image":[8,28,62,81,94,144],"ranking":[9,129],"process":[10,19],"for":[11,182],"stem":[12,74,85,111,126,140,173],"cell":[13,75,86,112,127,141,174],"colonies.":[14],"We":[15,177],"automate":[16],"manual":[18],"in":[20,124,160],"a":[21,38,149,180],"novel":[22],"way:":[23],"instead":[24],"fitting":[26],"off-the-shelf":[27],"features":[29,108,146,190],"and":[30,53,89,101,109,116,143,191],"colony":[31,76,107,113,128,145,175],"ranks":[32,114],"to":[33,58,83,170],"prediction":[34,151],"models,":[35],"we":[36],"define":[37],"new":[39],"feature":[40,95],"set":[41,96],"that":[42],"uniquely":[43],"characterizes":[44],"visual":[46],"clues":[47],"from":[48,61],"images":[49],"colonies":[52,60,87],"biological":[54,168],"rules":[55,169],"experts":[56],"use":[57],"rank":[59],"data.":[63],"Our":[64],"automation":[65,171],"considers":[66],"several":[67],"factors:":[68],"inconsistency":[70],"manually":[72],"assigned":[73],"ranks,":[77],"type":[79,92],"segmentation":[82],"detect":[84],"(manual":[88],"automated),":[90],"(off-the-shelf":[97],"vs.":[98],"custom":[99],"designed),":[100],"underlying":[103],"relationship":[104],"between":[105,134,185],"input":[106],"output":[110],"(linear":[115],"nonlinear).":[117],"The":[118,153],"novelty":[119],"our":[121,157,192],"work":[122,158],"lies":[123],"while":[130],"preserving":[131],"connection":[133],"visually":[135],"perceived":[136],"quality":[137],"characteristics":[138],"colonies,":[142],"combined":[147],"with":[148],"computational":[150],"model.":[152],"main":[154],"contribution":[155],"is":[159],"demonstrating":[161],"benefits":[163],"direct":[165],"interpretation":[166],"ranking.":[176],"also":[178],"outline":[179],"method":[181],"establishing":[183],"relationships":[184],"commonly":[187],"used":[188],"Haralick":[189],"custom-designed":[193],"features.":[194]},"counts_by_year":[{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
