{"id":"https://openalex.org/W2069807166","doi":"https://doi.org/10.1145/2629692","title":"An Interactive, Web-Based High Performance Modeling Environment for Computational Epidemiology","display_name":"An Interactive, Web-Based High Performance Modeling Environment for Computational Epidemiology","publication_year":2014,"publication_date":"2014-07-01","ids":{"openalex":"https://openalex.org/W2069807166","doi":"https://doi.org/10.1145/2629692","mag":"2069807166","pmid":"https://pubmed.ncbi.nlm.nih.gov/25530914"},"language":"en","primary_location":{"id":"doi:10.1145/2629692","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2629692","pdf_url":null,"source":{"id":"https://openalex.org/S4210170305","display_name":"ACM Transactions on Management Information Systems","issn_l":"2158-656X","issn":["2158-656X","2158-6578"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Transactions on Management Information Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4270291","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054022929","display_name":"Suruchi Deodhar","orcid":null},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Suruchi Deodhar","raw_affiliation_strings":["NDSSL, Virginia Bioinformatics Institute, Virginia Tech"],"affiliations":[{"raw_affiliation_string":"NDSSL, Virginia Bioinformatics Institute, Virginia Tech","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059350239","display_name":"Keith Bisset","orcid":null},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keith R. Bisset","raw_affiliation_strings":["NDSSL, Virginia Bioinformatics Institute, Virginia Tech"],"affiliations":[{"raw_affiliation_string":"NDSSL, Virginia Bioinformatics Institute, Virginia Tech","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065844089","display_name":"Jiangzhuo Chen","orcid":"https://orcid.org/0000-0002-2729-3881"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiangzhuo Chen","raw_affiliation_strings":["NDSSL, Virginia Bioinformatics Institute, Virginia Tech"],"affiliations":[{"raw_affiliation_string":"NDSSL, Virginia Bioinformatics Institute, Virginia Tech","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043808743","display_name":"Yifei Ma","orcid":"https://orcid.org/0000-0003-1305-3577"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yifei Ma","raw_affiliation_strings":["NDSSL, Virginia Bioinformatics Institute, Virginia Tech"],"affiliations":[{"raw_affiliation_string":"NDSSL, Virginia Bioinformatics Institute, Virginia Tech","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020293284","display_name":"Madhav Marathe","orcid":"https://orcid.org/0000-0003-1653-0658"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Madhav V. Marathe","raw_affiliation_strings":["NDSSL, Virginia Bioinformatics Institute, Virginia Tech"],"affiliations":[{"raw_affiliation_string":"NDSSL, Virginia Bioinformatics Institute, Virginia Tech","institution_ids":["https://openalex.org/I859038795"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5054022929"],"corresponding_institution_ids":["https://openalex.org/I859038795"],"apc_list":null,"apc_paid":null,"fwci":1.7419,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.90103491,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"5","issue":"2","first_page":"1","last_page":"27"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9609000086784363,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9609000086784363,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.9429000020027161,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14509","display_name":"demographic modeling and climate adaptation","score":0.9329000115394592,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7438513040542603},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.5366724133491516},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.5006353855133057},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4985964298248291},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4707922041416168},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.45635297894477844},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.45228904485702515},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.4282378554344177},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32539138197898865},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.23207640647888184}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7438513040542603},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.5366724133491516},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.5006353855133057},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4985964298248291},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4707922041416168},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.45635297894477844},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.45228904485702515},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.4282378554344177},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32539138197898865},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.23207640647888184},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/2629692","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2629692","pdf_url":null,"source":{"id":"https://openalex.org/S4210170305","display_name":"ACM Transactions on Management Information Systems","issn_l":"2158-656X","issn":["2158-656X","2158-6578"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Transactions on Management Information Systems","raw_type":"journal-article"},{"id":"pmid:25530914","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25530914","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM transactions on management information systems","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4270291","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4270291","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ACM Trans Manag Inf Syst","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:4270291","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4270291","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ACM Trans Manag Inf Syst","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1239822141","display_name":null,"funder_award_id":"OCI-0904844","funder_id":"https://openalex.org/F4320337377","funder_display_name":"Office of Advanced Cyberinfrastructure"},{"id":"https://openalex.org/G1767105801","display_name":null,"funder_award_id":"OCI-1032677","funder_id":"https://openalex.org/F4320337377","funder_display_name":"Office of Advanced Cyberinfrastructure"},{"id":"https://openalex.org/G3481696837","display_name":null,"funder_award_id":"3U01FM070694-09S1","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6119730843","display_name":null,"funder_award_id":"HDTRA1-11-D-0016-0001","funder_id":"https://openalex.org/F4320332186","funder_display_name":"Defense Threat Reduction Agency"},{"id":"https://openalex.org/G6171680190","display_name":null,"funder_award_id":"2U01GM070694-09","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8248470754","display_name":null,"funder_award_id":"CNS-1011769","funder_id":"https://openalex.org/F4320337388","funder_display_name":"Division of Computer and Network Systems"},{"id":"https://openalex.org/G8608301970","display_name":null,"funder_award_id":"HDTRA1-11-1-0016","funder_id":"https://openalex.org/F4320332186","funder_display_name":"Defense Threat Reduction Agency"}],"funders":[{"id":"https://openalex.org/F4320332186","display_name":"Defense Threat Reduction Agency","ror":"https://ror.org/04tz64554"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337377","display_name":"Office of Advanced Cyberinfrastructure","ror":"https://ror.org/04nh1dc89"},{"id":"https://openalex.org/F4320337388","display_name":"Division of Computer and Network Systems","ror":"https://ror.org/02rdzmk74"},{"id":"https://openalex.org/F4320338286","display_name":"Lawrence Livermore National Laboratory","ror":"https://ror.org/041nk4h53"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1493256835","https://openalex.org/W1515387717","https://openalex.org/W1544632947","https://openalex.org/W1964326221","https://openalex.org/W1965045549","https://openalex.org/W1965499304","https://openalex.org/W1984647626","https://openalex.org/W1995395876","https://openalex.org/W2001454048","https://openalex.org/W2004826528","https://openalex.org/W2039967553","https://openalex.org/W2050577796","https://openalex.org/W2061370256","https://openalex.org/W2062205069","https://openalex.org/W2065069831","https://openalex.org/W2073627497","https://openalex.org/W2074025765","https://openalex.org/W2089636653","https://openalex.org/W2089985142","https://openalex.org/W2090240240","https://openalex.org/W2092026900","https://openalex.org/W2092092574","https://openalex.org/W2092522621","https://openalex.org/W2100776472","https://openalex.org/W2107334866","https://openalex.org/W2109278577","https://openalex.org/W2118906894","https://openalex.org/W2122271145","https://openalex.org/W2123279152","https://openalex.org/W2123951972","https://openalex.org/W2125910575","https://openalex.org/W2126393394","https://openalex.org/W2130971503","https://openalex.org/W2132863465","https://openalex.org/W2142240784","https://openalex.org/W3011483117","https://openalex.org/W4243585190","https://openalex.org/W6676698813"],"related_works":["https://openalex.org/W1608278265","https://openalex.org/W2048990642","https://openalex.org/W2097677915","https://openalex.org/W2278313610","https://openalex.org/W1649706580","https://openalex.org/W1186135329","https://openalex.org/W3195608031","https://openalex.org/W1979206663","https://openalex.org/W1498430983","https://openalex.org/W2047602962"],"abstract_inverted_index":{"We":[0,222],"present":[1],"an":[2,91,96],"integrated":[3,97],"interactive":[4],"modeling":[5,63,98],"environment":[6,13,45,99,203],"to":[7,28,55,81,101,128,160,243],"support":[8],"public":[9,66],"health":[10,67],"epidemiology.":[11],"The":[12,44,239],"combines":[14],"a":[15,21,38,41,49,132,150],"high":[16],"resolution":[17],"individual-based":[18],"model":[19],"with":[20],"user-friendly":[22,123],"web-based":[23],"interface":[24],"that":[25,52,86,107,125,152],"allows":[26,53],"analysts":[27,54],"access":[29,177],"the":[30,33,62,84,114,137,141,144,158,166,178,181,202,214,224,227,245],"models":[31],"and":[32,122,130,135,164,169,188,210,248],"analytics":[34],"back-end":[35],"remotely":[36],"from":[37],"desktop":[39],"or":[40],"mobile":[42],"device.":[43],"is":[46,74,100,117,157],"based":[47,139,192,233],"on":[48,140,193,234],"loosely-coupled":[50],"service-oriented-architecture":[51],"explore":[56],"various":[57],"counter":[58],"factual":[59],"scenarios.":[60,238],"As":[61],"tools":[64],"for":[65,78,95,207,217],"epidemiology":[68],"are":[69,241],"getting":[70],"more":[71],"sophisticated,":[72],"it":[73],"becoming":[75],"increasingly":[76],"hard":[77],"non-computational":[79],"scientists":[80],"effectively":[82],"use":[83,105],"systems":[85],"incorporate":[87],"such":[88,106],"models.":[89],"Thus":[90],"important":[92],"design":[93,129,155],"consideration":[94],"improve":[102],"ease":[103],"of":[104,143,149,180,226],"experimental":[108,220],"simulations":[109],"can":[110,176],"be":[111],"driven":[112],"by":[113,119,229],"users.":[115],"This":[116],"achieved":[118],"designing":[120],"intuitive":[121],"interfaces":[124],"allow":[126],"users":[127],"analyze":[131],"computational":[133,231],"experiment":[134,138,208],"steer":[136],"state":[142,179,198],"system.":[145],"A":[146],"key":[147],"feature":[148],"system":[151,182,228],"supports":[153],"this":[154],"goal":[156],"ability":[159],"start,":[161],"stop,":[162],"pause":[163],"roll-back":[165],"disease":[167],"propagation":[168],"intervention":[170],"application":[171],"process":[172],"interactively.":[173],"An":[174],"analyst":[175],"at":[183],"any":[184],"point":[185],"in":[186],"time":[187,216],"formulate":[189],"dynamic":[190],"interventions":[191],"additional":[194],"information":[195],"obtained":[196],"through":[197],"assessment.":[199],"In":[200],"addition,":[201],"provides":[204],"automated":[205],"services":[206],"set-up":[209],"management,":[211],"thus":[212],"reducing":[213],"overall":[215],"conducting":[218],"end-to-end":[219],"studies.":[221],"illustrate":[223],"applicability":[225],"describing":[230],"experiments":[232,240],"realistic":[235],"pandemic":[236],"planning":[237],"designed":[242],"demonstrate":[244],"system's":[246],"capability":[247],"enhanced":[249],"user":[250],"productivity.":[251]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
