{"id":"https://openalex.org/W2127607093","doi":"https://doi.org/10.1145/2623330.2623643","title":"Inside the atoms","display_name":"Inside the atoms","publication_year":2014,"publication_date":"2014-08-22","ids":{"openalex":"https://openalex.org/W2127607093","doi":"https://doi.org/10.1145/2623330.2623643","mag":"2127607093"},"language":"en","primary_location":{"id":"doi:10.1145/2623330.2623643","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2623330.2623643","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 20th ACM SIGKDD international conference on Knowledge discovery and data mining","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043236347","display_name":"Jingchao Ni","orcid":"https://orcid.org/0000-0002-2986-6612"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jingchao Ni","raw_affiliation_strings":["Case Western Reserve University, Cleveland, OH, USA"],"affiliations":[{"raw_affiliation_string":"Case Western Reserve University, Cleveland, OH, USA","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068043486","display_name":"Hanghang Tong","orcid":"https://orcid.org/0000-0003-4405-3887"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hanghang Tong","raw_affiliation_strings":["Arizona State University, Tempe, AZ, USA","Arizona State University , Tempe , AZ , USA"],"affiliations":[{"raw_affiliation_string":"Arizona State University, Tempe, AZ, USA","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"Arizona State University , Tempe , AZ , USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100380511","display_name":"Wei Fan","orcid":"https://orcid.org/0000-0002-2735-9350"},"institutions":[{"id":"https://openalex.org/I2250955327","display_name":"Huawei Technologies (China)","ror":"https://ror.org/00cmhce21","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250955327"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Fan","raw_affiliation_strings":["Huawei Noahs Ark Lab, Hong Kong, Hong Kong","Huawei Noahs Ark Lab, Hong Kong, Hong Kong#TAB#"],"affiliations":[{"raw_affiliation_string":"Huawei Noahs Ark Lab, Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I2250955327"]},{"raw_affiliation_string":"Huawei Noahs Ark Lab, Hong Kong, Hong Kong#TAB#","institution_ids":["https://openalex.org/I2250955327"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100368911","display_name":"Xiang Zhang","orcid":"https://orcid.org/0000-0003-1003-9892"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiang Zhang","raw_affiliation_strings":["Case Western Reserve University, Cleveland, OH, USA"],"affiliations":[{"raw_affiliation_string":"Case Western Reserve University, Cleveland, OH, USA","institution_ids":["https://openalex.org/I58956616"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5043236347"],"corresponding_institution_ids":["https://openalex.org/I58956616"],"apc_list":null,"apc_paid":null,"fwci":2.0915,"has_fulltext":false,"cited_by_count":63,"citation_normalized_percentile":{"value":0.87401756,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":null,"issue":null,"first_page":"1356","last_page":"1365"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7733081579208374},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.7164443731307983},{"id":"https://openalex.org/keywords/granularity","display_name":"Granularity","score":0.7010217308998108},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5643130540847778},{"id":"https://openalex.org/keywords/equivalence","display_name":"Equivalence (formal languages)","score":0.5409885048866272},{"id":"https://openalex.org/keywords/convergence","display_name":"Convergence (economics)","score":0.5407038331031799},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.5376710891723633},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5173046588897705},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4960411489009857},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.47393518686294556},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.459600031375885},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3423237204551697},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13763204216957092}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7733081579208374},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.7164443731307983},{"id":"https://openalex.org/C177774035","wikidata":"https://www.wikidata.org/wiki/Q1246948","display_name":"Granularity","level":2,"score":0.7010217308998108},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5643130540847778},{"id":"https://openalex.org/C2780069185","wikidata":"https://www.wikidata.org/wiki/Q7977945","display_name":"Equivalence (formal languages)","level":2,"score":0.5409885048866272},{"id":"https://openalex.org/C2777303404","wikidata":"https://www.wikidata.org/wiki/Q759757","display_name":"Convergence (economics)","level":2,"score":0.5407038331031799},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.5376710891723633},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5173046588897705},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4960411489009857},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.47393518686294556},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.459600031375885},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3423237204551697},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13763204216957092},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2623330.2623643","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2623330.2623643","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 20th ACM SIGKDD international conference on Knowledge discovery and data mining","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2043247683","display_name":null,"funder_award_id":"IIS1017415","funder_id":"https://openalex.org/F4320337389","funder_display_name":"Division of Information and Intelligent Systems"},{"id":"https://openalex.org/G225566251","display_name":null,"funder_award_id":"W911NF-12-C-0028","funder_id":"https://openalex.org/F4320332180","funder_display_name":"Defense Advanced Research Projects Agency"},{"id":"https://openalex.org/G2644264342","display_name":null,"funder_award_id":"No.2014CB340304","funder_id":"https://openalex.org/F4320321540","funder_display_name":"Ministry of Science and Technology of the People's Republic of China"},{"id":"https://openalex.org/G3311099182","display_name":null,"funder_award_id":"IIS-1218036","funder_id":"https://openalex.org/F4320337389","funder_display_name":"Division of Information and Intelligent Systems"},{"id":"https://openalex.org/G3915533176","display_name":null,"funder_award_id":"W911NF-11-C-0200","funder_id":"https://openalex.org/F4320332180","funder_display_name":"Defense Advanced Research Projects Agency"},{"id":"https://openalex.org/G6036943760","display_name":null,"funder_award_id":"IIS-1162374","funder_id":"https://openalex.org/F4320337389","funder_display_name":"Division of Information and Intelligent Systems"},{"id":"https://openalex.org/G948678646","display_name":null,"funder_award_id":"W911NF-09-2-0053","funder_id":"https://openalex.org/F4320338295","funder_display_name":"Army Research Laboratory"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321540","display_name":"Ministry of Science and Technology of the People's Republic of China","ror":"https://ror.org/027s68j25"},{"id":"https://openalex.org/F4320332180","display_name":"Defense Advanced Research Projects Agency","ror":"https://ror.org/02caytj08"},{"id":"https://openalex.org/F4320337389","display_name":"Division of Information and Intelligent Systems","ror":"https://ror.org/053a2cp42"},{"id":"https://openalex.org/F4320338295","display_name":"Army Research Laboratory","ror":"https://ror.org/011hc8f90"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W103340358","https://openalex.org/W1482680420","https://openalex.org/W1889698115","https://openalex.org/W1964731129","https://openalex.org/W1972714715","https://openalex.org/W1975414584","https://openalex.org/W1978498923","https://openalex.org/W2003707464","https://openalex.org/W2018156309","https://openalex.org/W2022322548","https://openalex.org/W2026417691","https://openalex.org/W2036568936","https://openalex.org/W2037933327","https://openalex.org/W2038122249","https://openalex.org/W2042533354","https://openalex.org/W2046831513","https://openalex.org/W2049028959","https://openalex.org/W2069153192","https://openalex.org/W2094129019","https://openalex.org/W2097391913","https://openalex.org/W2097498614","https://openalex.org/W2100582962","https://openalex.org/W2103478816","https://openalex.org/W2107638877","https://openalex.org/W2109480754","https://openalex.org/W2117831564","https://openalex.org/W2119412782","https://openalex.org/W2126124689","https://openalex.org/W2133313261","https://openalex.org/W2148847267","https://openalex.org/W2152755144","https://openalex.org/W2153449455","https://openalex.org/W2154455818","https://openalex.org/W2154654747","https://openalex.org/W2162274893","https://openalex.org/W2168175183","https://openalex.org/W2170057991","https://openalex.org/W6674794182","https://openalex.org/W6682494755","https://openalex.org/W6996148488"],"related_works":["https://openalex.org/W2931688134","https://openalex.org/W2377919138","https://openalex.org/W2378857091","https://openalex.org/W103652678","https://openalex.org/W4226090359","https://openalex.org/W2059697060","https://openalex.org/W936373746","https://openalex.org/W2975817033","https://openalex.org/W4382701072","https://openalex.org/W3160516639"],"abstract_inverted_index":{"Networks":[0,82],"are":[1,61],"prevalent":[2],"and":[3,113,153,162,170],"have":[4],"posed":[5],"many":[6],"fascinating":[7],"research":[8],"questions.":[9],"How":[10],"can":[11,31,92],"we":[12,32,72],"spot":[13],"similar":[14,46],"users,":[15],"e.g.,":[16],"virtual":[17],"identical":[18],"twins,":[19],"in":[20,109,135],"Cleveland":[21],"for":[22],"a":[23,27,74,79,110,117,136,146],"New":[24],"Yorker?":[25],"Given":[26],"query":[28],"disease,":[29],"how":[30],"prioritize":[33],"its":[34],"candidate":[35],"genes":[36],"by":[37],"incorporating":[38],"the":[39,54,59,62,66,88,107,131,168,171],"tissue-specific":[40],"protein":[41],"interaction":[42],"networks":[43],"of":[44,53,81,87,173],"those":[45],"diseases?":[47],"In":[48,69],"most,":[49],"if":[50],"not":[51],"all,":[52],"existing":[55],"network":[56,76,90],"ranking":[57,63,132,142],"methods,":[58],"nodes":[60,108],"objects":[64],"with":[65],"finest":[67],"granularity.":[68,119],"this":[70],"paper,":[71],"propose":[73,150],"new":[75,101],"data":[77,102],"model,":[78],"Network":[80],"(NoN),":[83],"where":[84],"each":[85],"node":[86],"main":[89],"itself":[91],"be":[93],"further":[94],"represented":[95],"as":[96,145,158],"another":[97],"(domain-specific)":[98],"network.":[99,139],"This":[100],"model":[103,124],"enables":[104,125],"to":[105],"compare":[106],"broader":[111],"context":[112],"rank":[114],"them":[115],"at":[116],"finer":[118],"Moreover,":[120],"such":[121,157],"an":[122],"NoN":[123,144],"much":[126],"more":[127],"efficient":[128,151],"search":[129],"when":[130],"targets":[133],"reside":[134],"certain":[137],"domain-specific":[138],"We":[140],"formulate":[141],"on":[143],"regularized":[147],"optimization":[148],"problem;":[149],"algorithms":[152],"provide":[154],"theoretical":[155],"analysis,":[156],"optimality,":[159],"convergence,":[160],"complexity":[161],"equivalence.":[163],"Extensive":[164],"experimental":[165],"evaluations":[166],"demonstrate":[167],"effectiveness":[169],"efficiency":[172],"our":[174],"methods.":[175]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":13},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
