{"id":"https://openalex.org/W2000453154","doi":"https://doi.org/10.1145/2618243.2618276","title":"Toward efficient and reliable genome analysis using main-memory database systems","display_name":"Toward efficient and reliable genome analysis using main-memory database systems","publication_year":2014,"publication_date":"2014-06-24","ids":{"openalex":"https://openalex.org/W2000453154","doi":"https://doi.org/10.1145/2618243.2618276","mag":"2000453154"},"language":"en","primary_location":{"id":"doi:10.1145/2618243.2618276","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2618243.2618276","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 26th International Conference on Scientific and Statistical Database Management","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010389757","display_name":"Sebastian Dorok","orcid":null},"institutions":[{"id":"https://openalex.org/I4210138551","display_name":"University Hospital Magdeburg","ror":"https://ror.org/03m04df46","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210138551"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sebastian Dorok","raw_affiliation_strings":["University of Magdeburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Magdeburg, Germany","institution_ids":["https://openalex.org/I4210138551"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032404318","display_name":"Sebastian Bre\u00df","orcid":null},"institutions":[{"id":"https://openalex.org/I4210138551","display_name":"University Hospital Magdeburg","ror":"https://ror.org/03m04df46","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210138551"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sebastian Bre\u00df","raw_affiliation_strings":["University of Magdeburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Magdeburg, Germany","institution_ids":["https://openalex.org/I4210138551"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029007104","display_name":"Horstfried L\u00e4pple","orcid":null},"institutions":[{"id":"https://openalex.org/I67348948","display_name":"Bayer (Germany)","ror":"https://ror.org/04hmn8g73","country_code":"DE","type":"company","lineage":["https://openalex.org/I67348948"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Horstfried L\u00e4pple","raw_affiliation_strings":["Bayer HealthCare AG, Germany","Bayer Healthcare AG (Germany)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bayer HealthCare AG, Germany","institution_ids":["https://openalex.org/I67348948"]},{"raw_affiliation_string":"Bayer Healthcare AG (Germany)","institution_ids":["https://openalex.org/I67348948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042946019","display_name":"Gunter Saake","orcid":"https://orcid.org/0000-0001-9576-8474"},"institutions":[{"id":"https://openalex.org/I4210138551","display_name":"University Hospital Magdeburg","ror":"https://ror.org/03m04df46","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210138551"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gunter Saake","raw_affiliation_strings":["University of Magdeburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Magdeburg, Germany","institution_ids":["https://openalex.org/I4210138551"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.7154,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.83981281,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7698793411254883},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5049975514411926}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7698793411254883},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5049975514411926}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/2618243.2618276","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2618243.2618276","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 26th International Conference on Scientific and Statistical Database Management","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.637.3104","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.637.3104","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://wwwiti.cs.uni-magdeburg.de/iti_db/publikationen/ps/auto/DBLS14.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320307771","display_name":"Bayer","ror":"https://ror.org/04hmn8g73"},{"id":"https://openalex.org/F4320320303","display_name":"Bayer HealthCare","ror":"https://ror.org/04hmn8g73"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1571338321","https://openalex.org/W1583240815","https://openalex.org/W1657092947","https://openalex.org/W1800630092","https://openalex.org/W1805348380","https://openalex.org/W1978307270","https://openalex.org/W1983634948","https://openalex.org/W1990073900","https://openalex.org/W2007807048","https://openalex.org/W2049648708","https://openalex.org/W2049656505","https://openalex.org/W2061680337","https://openalex.org/W2091193685","https://openalex.org/W2104003087","https://openalex.org/W2108234281","https://openalex.org/W2114303224","https://openalex.org/W2118526609","https://openalex.org/W2120048439","https://openalex.org/W2123686039","https://openalex.org/W2124465358","https://openalex.org/W2125816119","https://openalex.org/W2147549027","https://openalex.org/W2963391732","https://openalex.org/W3138135046"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{"Improvements":[0],"in":[1,11],"DNA":[2],"sequencing":[3],"technologies":[4],"allow":[5],"to":[6,28,47,50,71,80],"sequence":[7],"complete":[8],"human":[9],"genomes":[10],"a":[12],"short":[13],"time":[14],"and":[15,30,65,74,108],"at":[16],"acceptable":[17],"cost.":[18],"Hence,":[19],"the":[20],"vision":[21,38,53],"of":[22,102],"genome":[23,76],"analysis":[24],"as":[25,62],"standard":[26],"procedure":[27],"support":[29],"improve":[31],"medical":[32],"treatment":[33],"becomes":[34],"reachable.":[35],"In":[36],"this":[37,52],"paper,":[39],"we":[40,99],"describe":[41],"important":[42,70],"data-management":[43,59,96],"challenges":[44,83],"that":[45],"have":[46],"be":[48],"met":[49],"make":[51],"come":[54],"true.":[55],"Besides":[56],"genome-analysis":[57,104],"performance,":[58],"capabilities":[60,93],"such":[61],"data":[63,66],"provenance":[64],"integrity":[67],"become":[68],"increasingly":[69],"enable":[72],"comprehensible":[73],"reliable":[75],"analysis.":[77],"We":[78],"argue":[79],"meet":[81],"these":[82],"by":[84],"using":[85],"main-memory":[86],"database":[87],"technologies,":[88],"which":[89],"combine":[90],"fast":[91],"processing":[92],"with":[94],"extensive":[95],"capabilities.":[97],"Finally,":[98],"discuss":[100],"possibilities":[101],"integrating":[103],"tasks":[105],"into":[106],"DBMSs":[107],"derive":[109],"new":[110],"research":[111],"questions.":[112]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
