{"id":"https://openalex.org/W2031908348","doi":"https://doi.org/10.1145/2616498.2616553","title":"Computational Anatomy Gateway","display_name":"Computational Anatomy Gateway","publication_year":2014,"publication_date":"2014-07-11","ids":{"openalex":"https://openalex.org/W2031908348","doi":"https://doi.org/10.1145/2616498.2616553","mag":"2031908348"},"language":"en","primary_location":{"id":"doi:10.1145/2616498.2616553","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2616498.2616553","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2014 Annual Conference on Extreme Science and Engineering Discovery Environment","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090532380","display_name":"Saurabh Jain","orcid":"https://orcid.org/0009-0001-1157-5710"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Saurabh Jain","raw_affiliation_strings":["Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218","Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218#TAB#"],"affiliations":[{"raw_affiliation_string":"Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218#TAB#","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082725826","display_name":"Daniel J. Tward","orcid":"https://orcid.org/0000-0002-4607-6807"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel J. Tward","raw_affiliation_strings":["Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218","Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218#TAB#"],"affiliations":[{"raw_affiliation_string":"Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218#TAB#","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100648333","display_name":"David S. Lee","orcid":"https://orcid.org/0000-0002-5984-8861"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David S. Lee","raw_affiliation_strings":["Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218","Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218#TAB#"],"affiliations":[{"raw_affiliation_string":"Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218#TAB#","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052454247","display_name":"Anthony Kolasny","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anthony Kolasny","raw_affiliation_strings":["Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218","Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218#TAB#"],"affiliations":[{"raw_affiliation_string":"Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218#TAB#","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109858314","display_name":"Timothy Brown","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Timothy Brown","raw_affiliation_strings":["Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218","Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218#TAB#"],"affiliations":[{"raw_affiliation_string":"Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218#TAB#","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085896998","display_name":"J. Tilak Ratnanather","orcid":"https://orcid.org/0000-0002-8631-489X"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Tilak Ratnanather","raw_affiliation_strings":["Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218","Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218#TAB#"],"affiliations":[{"raw_affiliation_string":"Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218#TAB#","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033151214","display_name":"Michael I. Miller","orcid":"https://orcid.org/0000-0003-4689-3855"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael I. Miller","raw_affiliation_strings":["Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218","Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218#TAB#"],"affiliations":[{"raw_affiliation_string":"Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218#TAB#","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064320962","display_name":"Laurent Youn\u00e8s","orcid":"https://orcid.org/0000-0003-2017-9565"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Laurent Younes","raw_affiliation_strings":["Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218","Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218#TAB#"],"affiliations":[{"raw_affiliation_string":"Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Center for Imaging Science, Johns Hopkins University, 3400 N Charles St., Baltimore, MD 21218#TAB#","institution_ids":["https://openalex.org/I145311948"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5090532380"],"corresponding_institution_ids":["https://openalex.org/I145311948"],"apc_list":null,"apc_paid":null,"fwci":1.2194,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.82978612,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.9818999767303467,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12417","display_name":"Morphological variations and asymmetry","score":0.9672999978065491,"subfield":{"id":"https://openalex.org/subfields/2608","display_name":"Geometry and Topology"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7775233387947083},{"id":"https://openalex.org/keywords/diffeomorphism","display_name":"Diffeomorphism","score":0.6053810119628906},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.584463894367218},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5035926699638367},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.493613600730896},{"id":"https://openalex.org/keywords/convolution","display_name":"Convolution (computer science)","score":0.4519972801208496},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.43661150336265564},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3715607523918152},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35228776931762695},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14837661385536194},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.12154310941696167}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7775233387947083},{"id":"https://openalex.org/C47556283","wikidata":"https://www.wikidata.org/wiki/Q1058314","display_name":"Diffeomorphism","level":2,"score":0.6053810119628906},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.584463894367218},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5035926699638367},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.493613600730896},{"id":"https://openalex.org/C45347329","wikidata":"https://www.wikidata.org/wiki/Q5166604","display_name":"Convolution (computer science)","level":3,"score":0.4519972801208496},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.43661150336265564},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3715607523918152},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35228776931762695},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14837661385536194},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.12154310941696167},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2616498.2616553","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2616498.2616553","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2014 Annual Conference on Extreme Science and Engineering Discovery Environment","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W586270867","https://openalex.org/W1503893179","https://openalex.org/W1543220894","https://openalex.org/W2020230579","https://openalex.org/W2066083976","https://openalex.org/W2066648187","https://openalex.org/W2125459742","https://openalex.org/W2153862949","https://openalex.org/W4295632409","https://openalex.org/W6655546516"],"related_works":["https://openalex.org/W2354062721","https://openalex.org/W2351938575","https://openalex.org/W3107474891","https://openalex.org/W2388359778","https://openalex.org/W2078931192","https://openalex.org/W1534842550","https://openalex.org/W266446692","https://openalex.org/W3104281043","https://openalex.org/W2388892594","https://openalex.org/W2347429546"],"abstract_inverted_index":{"Computational":[0,269],"Anatomy":[1,270],"(CA)":[2],"is":[3,24,42,70,96,104,119,151],"a":[4,36,51,58,62,120,238],"discipline":[5],"focused":[6],"on":[7,64,194,241],"the":[8,12,25,65,75,97,100,106,109,115,153,160,173,187,197,210,220,223,230,243,267,273,277],"quantitative":[9],"analysis":[10,91,254],"of":[11,32,47,53,67,99,146,189,199,222,232],"variability":[13],"in":[14,74,89,114,142,155,183],"biological":[15],"shape.":[16],"The":[17],"Large":[18],"Deformation":[19],"Diffeomorphic":[20],"Metric":[21],"Mapping":[22],"(LDDMM)":[23],"key":[26],"algorithm":[27],"which":[28,124,205],"assigns":[29],"computable":[30],"descriptors":[31],"anatomical":[33,48],"shapes":[34,49],"and":[35,60,78,102,144,149,245],"metric":[37,63],"distance":[38],"between":[39],"shapes.":[40],"This":[41,235],"achieved":[43],"by":[44,159,259],"describing":[45],"populations":[46,169],"as":[50,249],"group":[52],"diffeomorphic":[54],"transformations":[55],"applied":[56],"to":[57,111,176,209,228,275],"template,":[59,101],"using":[61,92],"space":[66],"diffeomorphisms.":[68],"LDDMM":[69],"being":[71],"used":[72],"extensively":[73],"neuroimaging":[76,244],"(www.mristudio.org)":[77],"cardiovascular":[79],"imaging":[80,247],"(www.cvrgrid.org)":[81],"communities.":[82],"There":[83],"are":[84,217],"two":[85],"major":[86],"components":[87],"involved":[88],"shape":[90,253],"this":[93],"paradigm.":[94],"First":[95],"estimation":[98,118],"second":[103],"calculating":[105],"diffeomorphisms":[107],"mapping":[108],"template":[110,175],"each":[112,130,136,147,177],"subject":[113,178],"population.":[116],"Template":[117],"computationally":[121],"expensive":[122],"problem,":[123],"involves":[125],"an":[126],"iterative":[127],"process,":[128],"where":[129],"iteration":[131],"calculates":[132],"one":[133],"diffeomorphism":[134],"for":[135,167,257,280],"target.":[137],"These":[138],"can":[139,179],"be":[140,181],"calculated":[141],"parallel":[143],"independently":[145],"other,":[148],"XSEDE":[150,268],"providing":[152,272],"resources,":[154],"particular":[156],"those":[157],"provided":[158],"cluster":[161],"Stampede,":[162],"that":[163],"make":[164],"these":[165,252,260],"computations":[166],"large":[168,281],"possible.":[170],"Mappings":[171],"from":[172],"estimated":[174],"also":[180,218],"run":[182],"parallel.":[184],"In":[185],"addition,":[186],"use":[188,221,258],"NVIDIA":[190],"Tesla":[191],"GPUs":[192],"available":[193,224],"Stampede":[195],"present":[196],"possibility":[198],"speeding":[200],"up":[201],"certain":[202],"convolution-like":[203],"calculations":[204],"lend":[206],"themselves":[207],"well":[208],"General":[211],"Purpose":[212],"GPU":[213],"computation":[214],"model.":[215],"We":[216],"exploring":[219],"Xeon":[225],"Phi":[226],"Co-processors":[227],"increase":[229],"efficiency":[231],"our":[233,263],"codes.":[234],"will":[236],"have":[237],"huge":[239],"impact":[240],"both":[242],"cardiac":[246],"communities":[248,261],"we":[250],"bring":[251],"tools":[255],"online":[256],"through":[262],"webservice":[264],"(www.mricloud.org),":[265],"with":[266],"Gateway":[271],"resources":[274],"handle":[276],"computational":[278],"demands":[279],"populations.":[282]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
