{"id":"https://openalex.org/W1978515081","doi":"https://doi.org/10.1145/2597917.2597957","title":"High throughput genetic sequence analysis","display_name":"High throughput genetic sequence analysis","publication_year":2014,"publication_date":"2014-05-20","ids":{"openalex":"https://openalex.org/W1978515081","doi":"https://doi.org/10.1145/2597917.2597957","mag":"1978515081"},"language":"en","primary_location":{"id":"doi:10.1145/2597917.2597957","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2597917.2597957","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 11th ACM Conference on Computing Frontiers","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079100841","display_name":"Ham Ching Lam","orcid":null},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ham Ching Lam","raw_affiliation_strings":["University of Minnesota, Minneapolis MN","University of Minnesota , Minneapolis, Mn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Minnesota, Minneapolis MN","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"University of Minnesota , Minneapolis, Mn","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056023987","display_name":"Steve Cunningham","orcid":"https://orcid.org/0000-0001-7342-251X"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steve Cunningham","raw_affiliation_strings":["University of Minnesota, Minneapolis MN","University of Minnesota , Minneapolis, Mn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Minnesota, Minneapolis MN","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"University of Minnesota , Minneapolis, Mn","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065889932","display_name":"Srinand Sreevatsan","orcid":"https://orcid.org/0000-0002-5162-2403"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Srinand Sreevatsan","raw_affiliation_strings":["University of Minnesota, Saint Paul MN","University of Minnesota, Saint Paul MN#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Minnesota, Saint Paul MN","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"University of Minnesota, Saint Paul MN#TAB#","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082618302","display_name":"Daniel Boley","orcid":"https://orcid.org/0000-0002-2685-8449"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Boley","raw_affiliation_strings":["University of Minnesota, Minneapolis MN","University of Minnesota , Minneapolis, Mn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Minnesota, Minneapolis MN","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"University of Minnesota , Minneapolis, Mn","institution_ids":["https://openalex.org/I130238516"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I130238516"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11668","display_name":"interferon and immune responses","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.690605103969574},{"id":"https://openalex.org/keywords/diversification","display_name":"Diversification (marketing strategy)","score":0.6143436431884766},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5148083567619324},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.5057177543640137},{"id":"https://openalex.org/keywords/viral-phylodynamics","display_name":"Viral phylodynamics","score":0.49922800064086914},{"id":"https://openalex.org/keywords/influenza-a-virus","display_name":"Influenza A virus","score":0.48565948009490967},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.42537328600883484},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.41619592905044556},{"id":"https://openalex.org/keywords/vaccination","display_name":"Vaccination","score":0.41140851378440857},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4052037000656128},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39106184244155884},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2515769600868225},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21313780546188354},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.1897706687450409},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.10052487254142761}],"concepts":[{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.690605103969574},{"id":"https://openalex.org/C180916674","wikidata":"https://www.wikidata.org/wiki/Q3711935","display_name":"Diversification (marketing strategy)","level":2,"score":0.6143436431884766},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5148083567619324},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.5057177543640137},{"id":"https://openalex.org/C21833749","wikidata":"https://www.wikidata.org/wiki/Q7189431","display_name":"Viral phylodynamics","level":4,"score":0.49922800064086914},{"id":"https://openalex.org/C2777546802","wikidata":"https://www.wikidata.org/wiki/Q834390","display_name":"Influenza A virus","level":3,"score":0.48565948009490967},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.42537328600883484},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.41619592905044556},{"id":"https://openalex.org/C22070199","wikidata":"https://www.wikidata.org/wiki/Q192995","display_name":"Vaccination","level":2,"score":0.41140851378440857},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4052037000656128},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39106184244155884},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2515769600868225},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21313780546188354},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.1897706687450409},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.10052487254142761},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/2597917.2597957","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2597917.2597957","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 11th ACM Conference on Computing Frontiers","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.488.4450","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.488.4450","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www-users.cs.umn.edu/~boley/publications/papers/HighThruput14.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5199999809265137,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G1171815402","display_name":null,"funder_award_id":"IIS-0916750, IIS 1319749","funder_id":"https://openalex.org/F4320337389","funder_display_name":"Division of Information and Intelligent Systems"},{"id":"https://openalex.org/G3999219959","display_name":null,"funder_award_id":"HHS N266200700007C","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"},{"id":"https://openalex.org/F4320337389","display_name":"Division of Information and Intelligent Systems","ror":"https://ror.org/053a2cp42"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1988533731","https://openalex.org/W1995875735","https://openalex.org/W2006866249","https://openalex.org/W2148694408","https://openalex.org/W2496323672","https://openalex.org/W2751318774","https://openalex.org/W4206070770","https://openalex.org/W6776535907","https://openalex.org/W6991957103"],"related_works":["https://openalex.org/W2622640614","https://openalex.org/W4385751614","https://openalex.org/W2148594363","https://openalex.org/W4379094465","https://openalex.org/W4313492089","https://openalex.org/W2988459972","https://openalex.org/W4250765138","https://openalex.org/W2921220897","https://openalex.org/W2189939530","https://openalex.org/W1445990149"],"abstract_inverted_index":{"We":[0,65],"present":[1],"an":[2,7],"application":[3],"paradigm":[4],"in":[5,38,56,82,89],"which":[6],"unsupervised":[8],"machine":[9],"learning":[10],"approach":[11],"is":[12],"applied":[13],"to":[14,45,72,112],"high":[15],"dimensional":[16],"influenza":[17,31,41,63,78,107],"sequence":[18],"datasets:":[19],"(1)":[20],"human":[21,61],"A/H3N2,":[22],"(2)":[23],"avian":[24],"H5,":[25],"and":[26,69],"(3)":[27],"North":[28,104],"American":[29,105],"swine":[30,94,106],"H3N2":[32,95],"virus.":[33,64],"Interesting":[34],"visual":[35],"patterns":[36],"observed":[37],"the":[39,53,57,60,77,90,93,101,113,121],"A/H3N2":[40,62],"virus":[42,79,108],"led":[43],"us":[44],"hypothesize":[46],"that":[47,76,100],"vaccination":[48],"could":[49],"be":[50,110],"one":[51],"of":[52,59,103],"driving":[54],"forces":[55],"evolution":[58],"provide":[66],"simulation":[67],"study":[68],"statistical":[70],"results":[71],"support":[73],"our":[74,97],"finding":[75],"evolves":[80,88],"differently":[81],"a":[83],"protected":[84],"environment":[85],"than":[86],"it":[87],"wild.":[91],"In":[92],"case,":[96],"result":[98],"suggests":[99],"diversification":[102],"can":[109],"attributed":[111],"mutations":[114],"at":[115],"two":[116],"positively":[117],"selected":[118],"sites":[119],"on":[120],"hemaggluttinin":[122],"protein.":[123]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
