{"id":"https://openalex.org/W2067287758","doi":"https://doi.org/10.1145/2534248.2534259","title":"Distributed tools deployment and management for multiple galaxy instances in globus genomics","display_name":"Distributed tools deployment and management for multiple galaxy instances in globus genomics","publication_year":2013,"publication_date":"2013-10-23","ids":{"openalex":"https://openalex.org/W2067287758","doi":"https://doi.org/10.1145/2534248.2534259","mag":"2067287758"},"language":"en","primary_location":{"id":"doi:10.1145/2534248.2534259","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2534248.2534259","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th Workshop on Workflows in Support of Large-Scale Science","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075004675","display_name":"Dinanath Sulakhe","orcid":"https://orcid.org/0000-0002-4680-1212"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dinanath Sulakhe","raw_affiliation_strings":["University of Chicago, Chicago, IL"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Chicago, Chicago, IL","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085390890","display_name":"\u00c1lex Rodr\u00edguez","orcid":"https://orcid.org/0000-0002-0213-6695"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex Rodriguez","raw_affiliation_strings":["University of Chicago, Chicago, IL"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Chicago, Chicago, IL","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074527367","display_name":"Nick Prozorovsky","orcid":null},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nick Prozorovsky","raw_affiliation_strings":["University of Illinois at Champaign-Urbana, Champaign, IL"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Illinois at Champaign-Urbana, Champaign, IL","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084386282","display_name":"Nilesh Kavthekar","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nilesh Kavthekar","raw_affiliation_strings":["University of Pennsylvania, Philadelphia, PA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pennsylvania, Philadelphia, PA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022967107","display_name":"Ravi Madduri","orcid":"https://orcid.org/0000-0003-2130-2887"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ravi Madduri","raw_affiliation_strings":["University of Chicago, Chicago, IL"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Chicago, Chicago, IL","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055103226","display_name":"Amol Parikh","orcid":null},"institutions":[{"id":"https://openalex.org/I876193797","display_name":"Vellore Institute of Technology University","ror":"https://ror.org/00qzypv28","country_code":"IN","type":"education","lineage":["https://openalex.org/I876193797"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Amol Parikh","raw_affiliation_strings":["Vellore Institute of Technology, Vellore, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Vellore Institute of Technology, Vellore, India","institution_ids":["https://openalex.org/I876193797"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010645166","display_name":"Paul Dave","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul Dave","raw_affiliation_strings":["University of Chicago, Chicago, IL"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Chicago, Chicago, IL","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084449063","display_name":"\u0141ukasz \u0141aci\u0144ski","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lukasz Lacinski","raw_affiliation_strings":["University of Chicago, Chicago, IL"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Chicago, Chicago, IL","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032231503","display_name":"Ian Foster","orcid":"https://orcid.org/0000-0003-2129-5269"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ian Foster","raw_affiliation_strings":["University of Chicago, Chicago, IL"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Chicago, Chicago, IL","institution_ids":["https://openalex.org/I40347166"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"106","last_page":"111"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8045985102653503},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.7146132588386536},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6860716342926025},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.5989134311676025},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5318198800086975},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.5121748447418213},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.21700191497802734},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.21047917008399963},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.09335678815841675}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8045985102653503},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.7146132588386536},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6860716342926025},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.5989134311676025},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5318198800086975},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.5121748447418213},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.21700191497802734},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.21047917008399963},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.09335678815841675},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2534248.2534259","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2534248.2534259","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th Workshop on Workflows in Support of Large-Scale Science","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6200000047683716,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G4033445783","display_name":null,"funder_award_id":"R24HL085343","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1973950074","https://openalex.org/W2023116290","https://openalex.org/W2080752625","https://openalex.org/W2088379928","https://openalex.org/W2096435507","https://openalex.org/W2108234281","https://openalex.org/W2132341951","https://openalex.org/W2136482257","https://openalex.org/W2137586531","https://openalex.org/W4244295356"],"related_works":["https://openalex.org/W2770234245","https://openalex.org/W96612179","https://openalex.org/W4229499248","https://openalex.org/W2566006169","https://openalex.org/W1567818861","https://openalex.org/W2987774938","https://openalex.org/W4256492088","https://openalex.org/W632915154","https://openalex.org/W2055733372","https://openalex.org/W3022067003"],"abstract_inverted_index":{"Workflow":[0],"systems":[1],"play":[2],"an":[3,46],"important":[4],"role":[5],"in":[6],"the":[7,10,27,33,70,77,86,102,120,139],"analysis":[8,40],"of":[9,41,72,134],"fast-growing":[11],"genomics":[12],"data":[13,112],"produced":[14],"by":[15,68,147,153],"low-cost":[16],"next":[17],"generation":[18],"sequencing":[19],"(NGS)":[20],"technologies.":[21],"Many":[22],"biomedical":[23],"research":[24,66,90],"groups":[25,91],"lack":[26],"expertise":[28],"to":[29,55],"assemble":[30],"and":[31,125,131,150],"run":[32,56],"sophisticated":[34],"computational":[35],"pipelines":[36],"required":[37],"for":[38,49,88,128],"high-throughput":[39],"such":[42],"data.":[43],"There":[44],"is":[45],"urgent":[47],"need":[48],"services":[50],"that":[51,100],"can":[52,62],"allow":[53],"researchers":[54],"their":[57,64,73],"analytical":[58,135],"workflows":[59],"where":[60],"they":[61],"define":[63],"own":[65],"methodologies":[67],"selecting":[69],"tools":[71,136,145,151],"interest.":[74],"We":[75,118],"present":[76],"challenges":[78],"associated":[79],"with":[80,111,161],"managing":[81,132],"multiple":[82,157],"Galaxy":[83,103,141,158],"instances":[84,159],"on":[85],"cloud":[87,96],"various":[89],"using":[92,115],"Globus":[93,116,162],"Genomics,":[94],"a":[95,107,126],"based":[97],"platform-as-a-service":[98],"(PaaS)":[99],"provides":[101],"workflow":[104],"system":[105],"as":[106],"hosted":[108,160],"service":[109],"along":[110],"management":[113],"capabilities":[114],"Online.":[117],"address":[119],"unique":[121],"challenges,":[122],"our":[123,148],"strategy,":[124],"tool":[127],"automatically":[129],"deploying":[130],"hundreds":[133],"coming":[137],"from":[138],"public":[140],"Tool":[142],"Shed,":[143],"new":[144],"wrapped":[146,152],"group,":[149],"end":[154],"users":[155],"across":[156],"Genomics.":[163]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
