{"id":"https://openalex.org/W1975290624","doi":"https://doi.org/10.1145/2528272.2528277","title":"\"Mining events from the literature for bioinformatics applications\" by S. Ananiadou, P. Thompson, and R. Nawaz; with Martin Vesely as coordinator","display_name":"\"Mining events from the literature for bioinformatics applications\" by S. Ananiadou, P. Thompson, and R. Nawaz; with Martin Vesely as coordinator","publication_year":2013,"publication_date":"2013-09-01","ids":{"openalex":"https://openalex.org/W1975290624","doi":"https://doi.org/10.1145/2528272.2528277","mag":"1975290624"},"language":"en","primary_location":{"id":"doi:10.1145/2528272.2528277","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2528272.2528277","pdf_url":null,"source":{"id":"https://openalex.org/S4210205892","display_name":"ACM SIGWEB Newsletter","issn_l":"1931-1435","issn":["1931-1435","1931-1745"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM SIGWEB Newsletter","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077976343","display_name":"Sophia Ananiadou","orcid":"https://orcid.org/0000-0002-4097-9191"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sophia Ananiadou","raw_affiliation_strings":["National Centre for Text Mining, School of Computer Science, University of Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100606557","display_name":"Paul M. Thompson","orcid":"https://orcid.org/0000-0002-4720-8867"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul Thompson","raw_affiliation_strings":["National Centre for Text Mining, School of Computer Science, University of Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087735486","display_name":"Raheel Nawaz","orcid":"https://orcid.org/0000-0001-9588-0052"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Raheel Nawaz","raw_affiliation_strings":["National Centre for Text Mining, School of Computer Science, University of Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I28407311"],"apc_list":null,"apc_paid":null,"fwci":0.1475,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.54937127,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"2013","issue":"Autumn","first_page":"1","last_page":"12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9843000173568726,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.808722198009491},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.6520575284957886},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6221029162406921},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.616021990776062},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5962070226669312},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5247949361801147},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4665137529373169},{"id":"https://openalex.org/keywords/order","display_name":"Order (exchange)","score":0.4169120788574219},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.35862743854522705},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.27553313970565796},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2109016478061676},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09173089265823364}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.808722198009491},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.6520575284957886},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6221029162406921},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.616021990776062},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5962070226669312},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5247949361801147},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4665137529373169},{"id":"https://openalex.org/C182306322","wikidata":"https://www.wikidata.org/wiki/Q1779371","display_name":"Order (exchange)","level":2,"score":0.4169120788574219},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.35862743854522705},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.27553313970565796},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2109016478061676},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09173089265823364},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2528272.2528277","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2528272.2528277","pdf_url":null,"source":{"id":"https://openalex.org/S4210205892","display_name":"ACM SIGWEB Newsletter","issn_l":"1931-1435","issn":["1931-1435","1931-1745"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM SIGWEB Newsletter","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6399999856948853,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":79,"referenced_works":["https://openalex.org/W8550301","https://openalex.org/W41511501","https://openalex.org/W165790511","https://openalex.org/W1480017700","https://openalex.org/W1480287196","https://openalex.org/W1487023033","https://openalex.org/W1502719479","https://openalex.org/W1532161976","https://openalex.org/W1553529581","https://openalex.org/W1850865022","https://openalex.org/W1965893653","https://openalex.org/W1973406306","https://openalex.org/W1973646872","https://openalex.org/W1991154713","https://openalex.org/W1994086054","https://openalex.org/W1996002274","https://openalex.org/W2001829063","https://openalex.org/W2028473264","https://openalex.org/W2033853342","https://openalex.org/W2044420612","https://openalex.org/W2044514479","https://openalex.org/W2047632644","https://openalex.org/W2051547811","https://openalex.org/W2051718393","https://openalex.org/W2054558802","https://openalex.org/W2065807795","https://openalex.org/W2076581021","https://openalex.org/W2080461503","https://openalex.org/W2085541230","https://openalex.org/W2085809930","https://openalex.org/W2093618552","https://openalex.org/W2096718637","https://openalex.org/W2096876337","https://openalex.org/W2097106271","https://openalex.org/W2097678794","https://openalex.org/W2099701465","https://openalex.org/W2101819947","https://openalex.org/W2103017472","https://openalex.org/W2103397879","https://openalex.org/W2108345035","https://openalex.org/W2108706252","https://openalex.org/W2109252435","https://openalex.org/W2109368679","https://openalex.org/W2110408238","https://openalex.org/W2113202266","https://openalex.org/W2114348990","https://openalex.org/W2116692665","https://openalex.org/W2120736575","https://openalex.org/W2121435899","https://openalex.org/W2122496897","https://openalex.org/W2124772738","https://openalex.org/W2126772639","https://openalex.org/W2129592938","https://openalex.org/W2132288458","https://openalex.org/W2133627190","https://openalex.org/W2135411671","https://openalex.org/W2137881949","https://openalex.org/W2144896636","https://openalex.org/W2145882012","https://openalex.org/W2149803936","https://openalex.org/W2152228269","https://openalex.org/W2158941357","https://openalex.org/W2161299591","https://openalex.org/W2162243457","https://openalex.org/W2162340487","https://openalex.org/W2171283231","https://openalex.org/W2250845941","https://openalex.org/W2251431888","https://openalex.org/W2402929825","https://openalex.org/W2529518929","https://openalex.org/W2548092433","https://openalex.org/W2748907937","https://openalex.org/W2914431807","https://openalex.org/W4285719527","https://openalex.org/W4399380115","https://openalex.org/W6629224663","https://openalex.org/W6677293857","https://openalex.org/W6691331089","https://openalex.org/W6759810374"],"related_works":["https://openalex.org/W3004288456","https://openalex.org/W4362496998","https://openalex.org/W2184397297","https://openalex.org/W1663435917","https://openalex.org/W2810079151","https://openalex.org/W2616159224","https://openalex.org/W2572241437","https://openalex.org/W2103320915","https://openalex.org/W3092715749","https://openalex.org/W3040870191"],"abstract_inverted_index":{"The":[0],"ever-increasing":[1],"rate":[2],"at":[3],"which":[4,68],"scientific":[5],"articles":[6],"are":[7,55,71],"being":[8],"published":[9],"means":[10],"that":[11,90,168],"text":[12],"mining":[13],"(TM)":[14],"is":[15,50],"becoming":[16],"a":[17,25,51],"necessary":[18],"technology":[19],"to":[20,24,28,75,85,123],"allow":[21],"information":[22,60,116],"relevant":[23],"user's":[26],"search":[27,177],"be":[29],"isolated":[30],"from":[31,117,132,143],"the":[32,39,88,108,137,156],"potential":[33],"mountain":[34],"of":[35,41,64,93,110,127,140,158,171],"irrelevant":[36],"information.":[37],"Whilst":[38],"extraction":[40,160,173],"named":[42],"entities,":[43],"such":[44,80,111],"as":[45],"genes,":[46],"proteins":[47],"and":[48,95,145,151,179],"phenotypes,":[49],"well-studied":[52],"topic,":[53],"researchers":[54],"usually":[56],"interested":[57],"in":[58,67,100,155],"discovering":[59],"about":[61],"specific":[62],"types":[63,92],"biomedical":[65,128],"reactions":[66,129],"these":[69],"entities":[70,99],"involved.":[72],"In":[73,102],"order":[74],"facilitate":[76],"efficient":[77],"searching":[78],"for":[79,87],"reactions,":[81],"TM":[82],"systems":[83,178],"need":[84],"account":[86],"fact":[89],"various":[91,138,148],"relationships":[94],"links":[96],"exist":[97],"between":[98],"texts.":[101],"this":[103],"article,":[104],"we":[105,163],"describe":[106,164],"how":[107,147],"identification":[109],"relationships,":[112],"together":[113],"with":[114,183],"interpretative":[115],"their":[118],"textual":[119,184],"contexts,":[120],"can":[121,153],"help":[122,154],"create":[124],"structured":[125],"representations":[126],"(called":[130],"events)":[131],"unstructured":[133],"text.":[134],"We":[135],"detail":[136],"challenges":[139],"extracting":[141],"events":[142],"text,":[144],"explain":[146],"tools,":[149],"resources":[150],"infrastructures":[152],"development":[157],"event":[159,172],"systems.":[161],"Finally,":[162],"some":[165],"concrete":[166],"applications":[167],"make":[169],"use":[170],"technology,":[174],"i.e.,":[175],"semantic":[176],"linking":[180],"biological":[181],"pathways":[182],"evidence.":[185]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
