{"id":"https://openalex.org/W2121439483","doi":"https://doi.org/10.1145/2506583.2512360","title":"HPVdb","display_name":"HPVdb","publication_year":2013,"publication_date":"2013-09-22","ids":{"openalex":"https://openalex.org/W2121439483","doi":"https://doi.org/10.1145/2506583.2512360","mag":"2121439483"},"language":"en","primary_location":{"id":"doi:10.1145/2506583.2512360","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2506583.2512360","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111766989","display_name":"Guang Lan Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Guang Lan Zhang","raw_affiliation_strings":["Boston University and Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, +1-617-358-5164"],"affiliations":[{"raw_affiliation_string":"Boston University and Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, +1-617-358-5164","institution_ids":["https://openalex.org/I4210117453","https://openalex.org/I111088046","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091490797","display_name":"Angelika B. Riemer","orcid":"https://orcid.org/0000-0002-5865-0714"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Angelika Riemer","raw_affiliation_strings":["German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, +49-6221-42-3820"],"affiliations":[{"raw_affiliation_string":"German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, +49-6221-42-3820","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000801624","display_name":"Derin B. Keskin","orcid":"https://orcid.org/0000-0002-8496-6181"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Derin B. Keskin","raw_affiliation_strings":["Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, +1-671-582-8066"],"affiliations":[{"raw_affiliation_string":"Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, +1-671-582-8066","institution_ids":["https://openalex.org/I4210117453","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090707605","display_name":"Lou Chitkushev","orcid":"https://orcid.org/0000-0002-9365-8818"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lou Chitkushev","raw_affiliation_strings":["MET Health Informatics Lab, Boston University, Boston, MA, +1-617-353-6771"],"affiliations":[{"raw_affiliation_string":"MET Health Informatics Lab, Boston University, Boston, MA, +1-617-353-6771","institution_ids":["https://openalex.org/I111088046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013709830","display_name":"Ellis L. Reinherz","orcid":"https://orcid.org/0000-0003-1048-5526"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ellis L. Reinherz","raw_affiliation_strings":["Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, +1-617-632-3412"],"affiliations":[{"raw_affiliation_string":"Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, +1-617-632-3412","institution_ids":["https://openalex.org/I4210117453","https://openalex.org/I136199984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089063979","display_name":"Vladimir Brusi\u0107","orcid":"https://orcid.org/0000-0003-0523-5266"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]},{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vladimir Brusic","raw_affiliation_strings":["Boston University and Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, +1-617-632-3824"],"affiliations":[{"raw_affiliation_string":"Boston University and Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, +1-617-632-3824","institution_ids":["https://openalex.org/I4210117453","https://openalex.org/I111088046","https://openalex.org/I136199984"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5111766989"],"corresponding_institution_ids":["https://openalex.org/I111088046","https://openalex.org/I136199984","https://openalex.org/I4210117453"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.13753213,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":93},"biblio":{"volume":null,"issue":null,"first_page":"843","last_page":"848"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10146","display_name":"Cervical Cancer and HPV Research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10146","display_name":"Cervical Cancer and HPV Research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10428","display_name":"Reproductive tract infections research","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/human-leukocyte-antigen","display_name":"Human leukocyte antigen","score":0.7749363780021667},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.7343318462371826},{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.5968673825263977},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5292424559593201},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.49324268102645874},{"id":"https://openalex.org/keywords/hpv-vaccines","display_name":"HPV vaccines","score":0.42613500356674194},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36367911100387573},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35554343461990356},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3425597548484802},{"id":"https://openalex.org/keywords/cervical-cancer","display_name":"Cervical cancer","score":0.31152480840682983},{"id":"https://openalex.org/keywords/hpv-infection","display_name":"HPV infection","score":0.23278602957725525},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.23223447799682617},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2200699746608734},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1278628408908844}],"concepts":[{"id":"https://openalex.org/C188280979","wikidata":"https://www.wikidata.org/wiki/Q911125","display_name":"Human leukocyte antigen","level":3,"score":0.7749363780021667},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.7343318462371826},{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.5968673825263977},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5292424559593201},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.49324268102645874},{"id":"https://openalex.org/C2780009117","wikidata":"https://www.wikidata.org/wiki/Q900189","display_name":"HPV vaccines","level":5,"score":0.42613500356674194},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36367911100387573},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35554343461990356},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3425597548484802},{"id":"https://openalex.org/C2778220009","wikidata":"https://www.wikidata.org/wiki/Q160105","display_name":"Cervical cancer","level":3,"score":0.31152480840682983},{"id":"https://openalex.org/C2778580637","wikidata":"https://www.wikidata.org/wiki/Q184627","display_name":"HPV infection","level":4,"score":0.23278602957725525},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.23223447799682617},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2200699746608734},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1278628408908844}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2506583.2512360","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2506583.2512360","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.7400000095367432,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310151","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1934180483","https://openalex.org/W1967972465","https://openalex.org/W1987350137","https://openalex.org/W1993772622","https://openalex.org/W1995875735","https://openalex.org/W2010472402","https://openalex.org/W2021427213","https://openalex.org/W2022234493","https://openalex.org/W2028339001","https://openalex.org/W2028933284","https://openalex.org/W2047368772","https://openalex.org/W2049997077","https://openalex.org/W2053843590","https://openalex.org/W2055043387","https://openalex.org/W2058244483","https://openalex.org/W2068900157","https://openalex.org/W2068967380","https://openalex.org/W2071848600","https://openalex.org/W2094296437","https://openalex.org/W2096866753","https://openalex.org/W2098765233","https://openalex.org/W2110575808","https://openalex.org/W2127774996","https://openalex.org/W2129612249","https://openalex.org/W2134770844","https://openalex.org/W2139736159","https://openalex.org/W2143158562","https://openalex.org/W2147427058","https://openalex.org/W2162281920","https://openalex.org/W2164710273","https://openalex.org/W2168688111","https://openalex.org/W2170785298","https://openalex.org/W2772934464","https://openalex.org/W4211208250"],"related_works":["https://openalex.org/W203802859","https://openalex.org/W4282927743","https://openalex.org/W2368503938","https://openalex.org/W125184020","https://openalex.org/W11223332","https://openalex.org/W1565490663","https://openalex.org/W3142343380","https://openalex.org/W2412665400","https://openalex.org/W1978915215","https://openalex.org/W2124583912"],"abstract_inverted_index":{"High-risk":[0],"human":[1],"papilloma":[2],"viruses":[3],"(HPV)":[4],"are":[5,167],"the":[6,30],"causes":[7],"of":[8,25,44,51,57,77,97,117,132,135,201,218],"many":[9],"cancers,":[10,27],"including":[11],"cervical,":[12],"anal,":[13],"vulvar,":[14],"vaginal,":[15],"penile":[16],"and":[17,23,54,68,82,89,112,142,156,184,228],"oropharyngeal.":[18],"To":[19,204],"facilitate":[20,191],"diagnosis,":[21],"prognosis,":[22],"characterization":[24],"these":[26],"we":[28],"constructed":[29],"Human":[31],"Papillomavirus":[32],"T":[33,65,86,143],"cell":[34,66,87,144],"Antigen":[35],"Database":[36],"(HPVdb).":[37],"It":[38,223],"contains":[39],"2865":[40],"curated":[41,182],"antigen":[42,219],"entries":[43],"antigenic":[45],"proteins":[46],"derived":[47],"from":[48,84,94],"18":[49,55],"genotypes":[50,56],"high-risk":[52],"HPV":[53,78,136],"low-risk":[58],"HPV.":[59,222],"HPVdb":[60,175,208],"also":[61],"catalogs":[62],"96":[63],"verified":[64,70],"epitopes":[67,88],"45":[69],"HLA":[71,90,159,165],"ligands.":[72],"Primary":[73],"amino":[74],"acid":[75],"sequences":[76],"antigens":[79],"were":[80,92,102],"collected":[81,93],"annotated":[83],"UniProtKB.":[85],"ligands":[91],"data":[95,101,183,192,212],"mining":[96,193],"scientific":[98],"literature.":[99],"The":[100],"subject":[103],"to":[104,190,194],"extensive":[105],"quality":[106],"control":[107],"(redundancy":[108],"elimination,":[109],"error":[110],"detection,":[111],"vocabulary":[113],"consolidation).":[114],"A":[115],"set":[116],"computational":[118],"tools":[119,189],"for":[120,162],"in-depth":[121],"analysis,":[122],"such":[123],"as":[124,172],"sequence":[125],"comparison":[126],"using":[127],"BLAST":[128],"search,":[129],"multiple":[130],"alignments":[131],"antigens,":[133],"classification":[134],"types":[137],"based":[138],"on":[139],"cancer":[140],"risk,":[141],"epitope/HLA":[145],"ligand":[146],"visualization,":[147],"have":[148],"been":[149],"integrated":[150],"in":[151,169,221],"HPVdb.":[152],"Predicted":[153],"Class":[154,157],"I":[155],"II":[158],"binding":[160],"peptides":[161,220],"15":[163],"common":[164],"alleles":[166],"included":[168],"this":[170],"database":[171,179],"putative":[173],"targets.":[174,203],"is":[176,209,224],"a":[177,210,215],"specialized":[178],"that":[180],"integrates":[181],"information":[185],"with":[186],"tailored":[187],"analysis":[188],"aid":[195],"rational":[196],"vaccine":[197,202],"design":[198],"by":[199],"discovery":[200],"our":[205],"best":[206],"knowledge,":[207],"unique":[211],"source":[213],"providing":[214],"comprehensive":[216],"list":[217],"available":[225],"at":[226],"http://cvc.dfci.harvard.edu/hpv/":[227],"http://met-hilab.bu.edu/hpvdb/.":[229]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
