{"id":"https://openalex.org/W2045502133","doi":"https://doi.org/10.1145/2506583.2506671","title":"Semi-automated Constraint-based Metabolic Model Generation","display_name":"Semi-automated Constraint-based Metabolic Model Generation","publication_year":2013,"publication_date":"2013-09-22","ids":{"openalex":"https://openalex.org/W2045502133","doi":"https://doi.org/10.1145/2506583.2506671","mag":"2045502133"},"language":"en","primary_location":{"id":"doi:10.1145/2506583.2506671","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2506583.2506671","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047506227","display_name":"Jesse R. Walsh","orcid":"https://orcid.org/0000-0001-6048-1166"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jesse R. Walsh","raw_affiliation_strings":["Iowa State University, 2014 Molec Biol, Ames, IA 50011-3260","Iowa State University, 2014 Molec Biol, Ames, IA 50011-3260#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Iowa State University, 2014 Molec Biol, Ames, IA 50011-3260","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Iowa State University, 2014 Molec Biol, Ames, IA 50011-3260#TAB#","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077949687","display_name":"Julie Dickerson","orcid":"https://orcid.org/0000-0003-4973-5641"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Julie A. Dickerson","raw_affiliation_strings":["Iowa State University, 3123 Coover, Ames, IA 50011-3260","Iowa State University, 3123 Coover, Ames, IA 50011-3260#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Iowa State University, 3123 Coover, Ames, IA 50011-3260","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Iowa State University, 3123 Coover, Ames, IA 50011-3260#TAB#","institution_ids":["https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I173911158"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08109478,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"668","last_page":"668"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10171","display_name":"Biofuel production and bioconversion","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10404","display_name":"Enzyme Catalysis and Immobilization","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.6714991331100464},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6487632393836975},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6204785704612732},{"id":"https://openalex.org/keywords/constraint","display_name":"Constraint (computer-aided design)","score":0.5647725462913513},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5583524107933044},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5108436942100525},{"id":"https://openalex.org/keywords/metabolic-engineering","display_name":"Metabolic engineering","score":0.4383561909198761},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31016260385513306},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20945274829864502},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2000843584537506},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.14227205514907837}],"concepts":[{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.6714991331100464},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6487632393836975},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6204785704612732},{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.5647725462913513},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5583524107933044},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5108436942100525},{"id":"https://openalex.org/C6350086","wikidata":"https://www.wikidata.org/wiki/Q6822347","display_name":"Metabolic engineering","level":3,"score":0.4383561909198761},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31016260385513306},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20945274829864502},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2000843584537506},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.14227205514907837},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2506583.2506671","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2506583.2506671","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W24843447","https://openalex.org/W94193318","https://openalex.org/W2073808674","https://openalex.org/W2173289516","https://openalex.org/W322176015","https://openalex.org/W20947408","https://openalex.org/W2028140658","https://openalex.org/W2073011570","https://openalex.org/W2468061618","https://openalex.org/W2093544117"],"abstract_inverted_index":{"Genome-scale":[0],"models":[1,63,71],"of":[2],"metabolism":[3],"are":[4,24,54,67],"becoming":[5],"increasingly":[6],"important":[7],"to":[8,40,44,60,73,78,84],"understanding":[9],"the":[10,57,79],"relationship":[11],"between":[12],"genotype":[13],"and":[14,81],"phenotype":[15],"in":[16,38],"an":[17],"organism":[18],"on":[19,31],"a":[20,32,48],"systems":[21],"level.":[22],"There":[23,66],"many":[25],"tools":[26],"being":[27,55],"developed":[28],"which":[29],"rely":[30],"genome-scale":[33,70,75],"metabolic":[34],"reconstruction":[35],"as":[36],"input":[37],"order":[39],"suggest":[41],"engineering":[42],"interventions":[43],"improve":[45],"or":[46],"modify":[47],"strain's":[49],"metabolism.":[50],"As":[51],"more":[52],"organisms":[53],"sequenced,":[56],"information":[58],"available":[59,74],"reconstruct":[61],"these":[62],"also":[64],"increases.":[65],"relatively":[68],"few":[69],"compared":[72],"reconstructions":[76],"due":[77],"difficulty":[80],"time":[82],"required":[83],"create":[85],"one.":[86]},"counts_by_year":[],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
