{"id":"https://openalex.org/W2147462655","doi":"https://doi.org/10.1145/2506583.2506653","title":"Meta-analysis of Genomic and Proteomic Features to Predict Synthetic Lethality of Yeast and Human Cancer","display_name":"Meta-analysis of Genomic and Proteomic Features to Predict Synthetic Lethality of Yeast and Human Cancer","publication_year":2013,"publication_date":"2013-09-22","ids":{"openalex":"https://openalex.org/W2147462655","doi":"https://doi.org/10.1145/2506583.2506653","mag":"2147462655"},"language":"en","primary_location":{"id":"doi:10.1145/2506583.2506653","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2506583.2506653","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://dr.ntu.edu.sg/bitstream/10356/100938/1/Wu_ACM-BCB_2013_MetaSL.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100340964","display_name":"Min Wu","orcid":"https://orcid.org/0000-0003-0977-3600"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Min Wu","raw_affiliation_strings":["School of Computer Engineering, Nanyang Technological University, Singapore 639798 and Data Analytic Department, Institute for Infocomm Research, A*STAR, Singapore 138632"],"affiliations":[{"raw_affiliation_string":"School of Computer Engineering, Nanyang Technological University, Singapore 639798 and Data Analytic Department, Institute for Infocomm Research, A*STAR, Singapore 138632","institution_ids":["https://openalex.org/I3005327000","https://openalex.org/I172675005","https://openalex.org/I115228651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044746916","display_name":"Xuejuan Li","orcid":"https://orcid.org/0000-0003-4086-6063"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Xuejuan Li","raw_affiliation_strings":["Data Analytic Department, Institute for Infocomm Research, A*STAR, Singapore 138632","School of Computer Engineering, Nanyang Technological University, Singapore 639798","School of Computer Engineering, Nanyang Technological University, Singapore, 639798"],"affiliations":[{"raw_affiliation_string":"Data Analytic Department, Institute for Infocomm Research, A*STAR, Singapore 138632","institution_ids":["https://openalex.org/I3005327000","https://openalex.org/I115228651"]},{"raw_affiliation_string":"School of Computer Engineering, Nanyang Technological University, Singapore 639798","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"School of Computer Engineering, Nanyang Technological University, Singapore, 639798","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101716232","display_name":"Fan Zhang","orcid":"https://orcid.org/0000-0001-8377-0235"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Fan Zhang","raw_affiliation_strings":["School of Computer Engineering, Nanyang Technological University, Singapore 639798","School of Computer Engineering, Nanyang Technological University, Singapore, 639798"],"affiliations":[{"raw_affiliation_string":"School of Computer Engineering, Nanyang Technological University, Singapore 639798","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"School of Computer Engineering, Nanyang Technological University, Singapore, 639798","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100418684","display_name":"Xiaoli Li","orcid":"https://orcid.org/0000-0002-0762-6562"},"institutions":[{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Xiaoli Li","raw_affiliation_strings":["Data Analytic Department, Institute for Infocomm Research, A*STAR, Singapore 138632","School of Computer Engineering, Nanyang Technological University, Singapore 639798"],"affiliations":[{"raw_affiliation_string":"Data Analytic Department, Institute for Infocomm Research, A*STAR, Singapore 138632","institution_ids":["https://openalex.org/I3005327000","https://openalex.org/I115228651"]},{"raw_affiliation_string":"School of Computer Engineering, Nanyang Technological University, Singapore 639798","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112553040","display_name":"Chee-Keong Kwoh","orcid":null},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Chee-Keong Kwoh","raw_affiliation_strings":["School of Computer Engineering, Nanyang Technological University, Singapore 639798","School of Computer Engineering, Nanyang Technological University, Singapore, 639798"],"affiliations":[{"raw_affiliation_string":"School of Computer Engineering, Nanyang Technological University, Singapore 639798","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"School of Computer Engineering, Nanyang Technological University, Singapore, 639798","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014529529","display_name":"Jie Zheng","orcid":"https://orcid.org/0000-0001-6774-9786"},"institutions":[{"id":"https://openalex.org/I66068411","display_name":"Genome Institute of Singapore","ror":"https://ror.org/05k8wg936","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I66068411"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Jie Zheng","raw_affiliation_strings":["School of Computer Engineering, Nanyang Technological University, Singapore 639798 and Genome Institute of Singapore, A*STAR, Singapore 138672"],"affiliations":[{"raw_affiliation_string":"School of Computer Engineering, Nanyang Technological University, Singapore 639798 and Genome Institute of Singapore, A*STAR, Singapore 138672","institution_ids":["https://openalex.org/I66068411","https://openalex.org/I172675005","https://openalex.org/I115228651"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100340964"],"corresponding_institution_ids":["https://openalex.org/I115228651","https://openalex.org/I172675005","https://openalex.org/I3005327000"],"apc_list":null,"apc_paid":null,"fwci":0.4492,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.66738045,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"384","last_page":"391"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/overfitting","display_name":"Overfitting","score":0.7501667141914368},{"id":"https://openalex.org/keywords/synthetic-lethality","display_name":"Synthetic lethality","score":0.7072415947914124},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6668633818626404},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5274567604064941},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4415958821773529},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.43359896540641785},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.41085946559906006},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.35642457008361816},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3497576117515564},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2086421251296997}],"concepts":[{"id":"https://openalex.org/C22019652","wikidata":"https://www.wikidata.org/wiki/Q331309","display_name":"Overfitting","level":3,"score":0.7501667141914368},{"id":"https://openalex.org/C2778502085","wikidata":"https://www.wikidata.org/wiki/Q7662767","display_name":"Synthetic lethality","level":4,"score":0.7072415947914124},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6668633818626404},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5274567604064941},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4415958821773529},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.43359896540641785},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.41085946559906006},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.35642457008361816},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3497576117515564},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2086421251296997},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.0},{"id":"https://openalex.org/C134935766","wikidata":"https://www.wikidata.org/wiki/Q210538","display_name":"DNA repair","level":3,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/2506583.2506653","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2506583.2506653","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics","raw_type":"proceedings-article"},{"id":"pmh:oai:dr.ntu.edu.sg:10356/100938","is_oa":true,"landing_page_url":"http://hdl.handle.net/10220/18183","pdf_url":"https://dr.ntu.edu.sg/bitstream/10356/100938/1/Wu_ACM-BCB_2013_MetaSL.pdf","source":{"id":"https://openalex.org/S4306402609","display_name":"DR-NTU (Nanyang Technological University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172675005","host_organization_name":"Nanyang Technological University","host_organization_lineage":["https://openalex.org/I172675005"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference Paper"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.726.6892","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.726.6892","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www1.i2r.a-star.edu.sg/%7Exlli/publication//MetaSL.pdf","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:dr.ntu.edu.sg:10356/100938","is_oa":true,"landing_page_url":"http://hdl.handle.net/10220/18183","pdf_url":"https://dr.ntu.edu.sg/bitstream/10356/100938/1/Wu_ACM-BCB_2013_MetaSL.pdf","source":{"id":"https://openalex.org/S4306402609","display_name":"DR-NTU (Nanyang Technological University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172675005","host_organization_name":"Nanyang Technological University","host_organization_lineage":["https://openalex.org/I172675005"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference Paper"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.8500000238418579,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1482925484","display_name":null,"funder_award_id":"Tier 1","funder_id":"https://openalex.org/F4320320751","funder_display_name":"Ministry of Education - Singapore"},{"id":"https://openalex.org/G5924748347","display_name":null,"funder_award_id":"M4010977.020","funder_id":"https://openalex.org/F4320320751","funder_display_name":"Ministry of Education - Singapore"}],"funders":[{"id":"https://openalex.org/F4320320751","display_name":"Ministry of Education - Singapore","ror":"https://ror.org/01kcva023"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2147462655.pdf","grobid_xml":"https://content.openalex.org/works/W2147462655.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1544729927","https://openalex.org/W1576520375","https://openalex.org/W1943746069","https://openalex.org/W1966182052","https://openalex.org/W1975931018","https://openalex.org/W1986214964","https://openalex.org/W1991170638","https://openalex.org/W2011159055","https://openalex.org/W2039378089","https://openalex.org/W2044511756","https://openalex.org/W2062185406","https://openalex.org/W2079634216","https://openalex.org/W2096283457","https://openalex.org/W2104922676","https://openalex.org/W2107067224","https://openalex.org/W2107710781","https://openalex.org/W2119444774","https://openalex.org/W2124156743","https://openalex.org/W2127073167","https://openalex.org/W2128049108","https://openalex.org/W2129997546","https://openalex.org/W2130687290","https://openalex.org/W2130907642","https://openalex.org/W2133990480","https://openalex.org/W2135046866","https://openalex.org/W2139104449","https://openalex.org/W2139854834","https://openalex.org/W2145284532","https://openalex.org/W2156909104","https://openalex.org/W2160413577","https://openalex.org/W2275877493","https://openalex.org/W2911964244","https://openalex.org/W2915108429","https://openalex.org/W3214669750","https://openalex.org/W4255796266","https://openalex.org/W4409798803","https://openalex.org/W6634442568","https://openalex.org/W6680366265","https://openalex.org/W6683581212"],"related_works":["https://openalex.org/W4362597605","https://openalex.org/W1574414179","https://openalex.org/W4297676672","https://openalex.org/W3009056573","https://openalex.org/W2922073769","https://openalex.org/W4281702477","https://openalex.org/W2490526372","https://openalex.org/W4376166922","https://openalex.org/W2987420353","https://openalex.org/W1491897707"],"abstract_inverted_index":{"A":[0,14],"major":[1],"goal":[2],"in":[3,43,198,205],"cancer":[4],"medicine":[5],"is":[6,18,63],"to":[7,106,188,231],"find":[8],"selective":[9],"drugs":[10],"with":[11,46,57,149],"reduced":[12],"side-effect.":[13],"pair":[15],"of":[16,25,34,75,89,117,129,138,146,160,164,175,195,227,233],"genes":[17,27,204],"called":[19],"synthetic":[20],"lethality":[21],"(SL)":[22],"if":[23],"mutations":[24],"both":[26],"will":[28,38,51],"kill":[29],"a":[30,41,47,53,72,158,193],"cell":[31],"while":[32],"mutation":[33],"either":[35],"gene":[36,42,50,76],"alone":[37],"not.":[39],"Hence,":[40],"SL":[44,90,196,228],"interactions":[45],"cancer-specific":[48],"mutated":[49,203],"be":[52],"promising":[54],"drug":[55],"target":[56],"anti-cancer":[58,235],"selectivity.":[59],"Wet-lab":[60],"screening":[61],"approach":[62,116],"still":[64],"so":[65],"costly":[66],"that":[67,119,200],"even":[68],"for":[69,86],"yeast":[70,162,187],"only":[71],"small":[73],"fraction":[74],"pairs":[77,197],"has":[78],"been":[79],"covered.":[80],"Computational":[81],"methods":[82,148],"are":[83,104],"therefore":[84],"important":[85],"large-scale":[87],"discovery":[88,232],"interactions.":[91],"Most":[92],"existing":[93,139],"approaches":[94],"focus":[95],"on":[96,157,225],"individual":[97],"features":[98,125],"or":[99,108],"machine":[100],"learning":[101],"methods,":[102],"which":[103],"prone":[105],"noise":[107],"overfitting.":[109],"In":[110],"this":[111],"paper,":[112],"we":[113,191],"propose":[114],"an":[115],"meta-analysis":[118],"integrates":[120],"17":[121],"genomic":[122],"and":[123,126,207,220,229],"proteomic":[124],"the":[127,136,153,161,177],"outputs":[128],"10":[130],"classification":[131],"methods.":[132,140],"It":[133,141],"thus":[134],"combines":[135],"strengths":[137],"also":[142],"adjusts":[143],"relative":[144],"contributions":[145],"multiple":[147],"weights":[150],"learned":[151],"from":[152,186],"training":[154],"data.":[155],"Running":[156],"dataset":[159],"strain":[163],"S.":[165],"cerevisiae,":[166],"our":[167],"method":[168,219],"achieves":[169],"AUC":[170],"(area":[171],"under":[172],"ROC":[173],"curve)":[174],"87.2%":[176],"highest":[178],"among":[179],"all":[180],"competitors.":[181],"Moreover,":[182],"through":[183],"orthologous":[184],"mapping":[185],"human":[189,199],"genes,":[190],"predicted":[192],"list":[194],"contain":[201],"top":[202],"lung":[206],"breast":[208],"cancers":[209],"recently":[210],"reported":[211],"by":[212],"The":[213],"Cancer":[214],"Genome":[215],"Atlas":[216],"(TCGA).":[217],"Our":[218],"predictions":[221],"would":[222],"shed":[223],"light":[224],"mechanisms":[226],"lead":[230],"novel":[234],"drugs.":[236]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
