{"id":"https://openalex.org/W1963560387","doi":"https://doi.org/10.1145/2506583.2506621","title":"PathCase-MAW","display_name":"PathCase-MAW","publication_year":2013,"publication_date":"2013-09-22","ids":{"openalex":"https://openalex.org/W1963560387","doi":"https://doi.org/10.1145/2506583.2506621","mag":"1963560387"},"language":"en","primary_location":{"id":"doi:10.1145/2506583.2506621","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2506583.2506621","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090836372","display_name":"A. Erc\u00fcment \u00c7i\u00e7ek","orcid":"https://orcid.org/0000-0001-8613-6619"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"A. Ercument Cicek","raw_affiliation_strings":["Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106","Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106#TAB#"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106","institution_ids":["https://openalex.org/I58956616"]},{"raw_affiliation_string":"Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106#TAB#","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100913092","display_name":"Xinjian Qi","orcid":null},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xinjian Qi","raw_affiliation_strings":["Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106","Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106#TAB#"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106","institution_ids":["https://openalex.org/I58956616"]},{"raw_affiliation_string":"Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106#TAB#","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035836413","display_name":"Ali Cakmak","orcid":"https://orcid.org/0000-0002-1382-6130"},"institutions":[{"id":"https://openalex.org/I13419840","display_name":"Istanbul \u015eehir University","ror":"https://ror.org/020ddy191","country_code":"TR","type":"education","lineage":["https://openalex.org/I13419840"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Ali Cakmak","raw_affiliation_strings":["Department of Computer Science, Istanbul Sehir University, Altunizade, Istanbul, TURKEY 34662"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Istanbul Sehir University, Altunizade, Istanbul, TURKEY 34662","institution_ids":["https://openalex.org/I13419840"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103212491","display_name":"Stephen R. Johnson","orcid":"https://orcid.org/0000-0002-7025-4933"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen R. Johnson","raw_affiliation_strings":["Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106","Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106#TAB#"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106","institution_ids":["https://openalex.org/I58956616"]},{"raw_affiliation_string":"Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106#TAB#","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013434423","display_name":"Han Xu","orcid":"https://orcid.org/0000-0002-1977-1046"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xu Han","raw_affiliation_strings":["Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106","Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106#TAB#"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106","institution_ids":["https://openalex.org/I58956616"]},{"raw_affiliation_string":"Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106#TAB#","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003410546","display_name":"Sami Alshalwi","orcid":null},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sami Alshalwi","raw_affiliation_strings":["Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106","Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106#TAB#"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106","institution_ids":["https://openalex.org/I58956616"]},{"raw_affiliation_string":"Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106#TAB#","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016412404","display_name":"G\u00fcltekin \u00d6zsoyo\u011flu","orcid":null},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gultekin Ozsoyoglu","raw_affiliation_strings":["Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106","Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106#TAB#"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106","institution_ids":["https://openalex.org/I58956616"]},{"raw_affiliation_string":"Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106#TAB#","institution_ids":["https://openalex.org/I58956616"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5090836372"],"corresponding_institution_ids":["https://openalex.org/I58956616"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.04297652,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"219","last_page":"228"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7960406541824341},{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.7918553352355957},{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.7859006524085999},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5669949054718018},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4957338571548462},{"id":"https://openalex.org/keywords/workbench","display_name":"Workbench","score":0.4546610713005066},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4491540789604187},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.44390738010406494},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.43483296036720276},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4335371255874634},{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.41323086619377136},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.3910609185695648},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.24155193567276},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.22263294458389282},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.19663646817207336},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.10838407278060913},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.106048583984375},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.089598149061203}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7960406541824341},{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.7918553352355957},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.7859006524085999},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5669949054718018},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4957338571548462},{"id":"https://openalex.org/C2779145975","wikidata":"https://www.wikidata.org/wiki/Q347690","display_name":"Workbench","level":3,"score":0.4546610713005066},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4491540789604187},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.44390738010406494},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.43483296036720276},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4335371255874634},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.41323086619377136},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.3910609185695648},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.24155193567276},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.22263294458389282},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.19663646817207336},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.10838407278060913},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.106048583984375},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.089598149061203},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2506583.2506621","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2506583.2506621","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12","score":0.46000000834465027}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1561767438","https://openalex.org/W1993967688","https://openalex.org/W1994656497","https://openalex.org/W1999895438","https://openalex.org/W2005786953","https://openalex.org/W2027109445","https://openalex.org/W2028561804","https://openalex.org/W2042141122","https://openalex.org/W2050153048","https://openalex.org/W2053385401","https://openalex.org/W2073886494","https://openalex.org/W2083011190","https://openalex.org/W2091082435","https://openalex.org/W2104108767","https://openalex.org/W2106193566","https://openalex.org/W2107062718","https://openalex.org/W2114466040","https://openalex.org/W2120599990","https://openalex.org/W2124236793","https://openalex.org/W2128601422","https://openalex.org/W2132992030","https://openalex.org/W2134221731","https://openalex.org/W2139915240","https://openalex.org/W2153131751","https://openalex.org/W2155967165","https://openalex.org/W2159482845","https://openalex.org/W2161309440","https://openalex.org/W2163841023","https://openalex.org/W2165674132","https://openalex.org/W2168465568","https://openalex.org/W2171437346","https://openalex.org/W4233060585","https://openalex.org/W4294216483","https://openalex.org/W6633749945"],"related_works":["https://openalex.org/W2150908245","https://openalex.org/W2374260038","https://openalex.org/W2136043941","https://openalex.org/W2097410126","https://openalex.org/W2211443823","https://openalex.org/W2043776573","https://openalex.org/W2216418212","https://openalex.org/W2020641517","https://openalex.org/W2075919068","https://openalex.org/W2047632644"],"abstract_inverted_index":{"Metabolic":[0,167],"networks":[1,42],"have":[2,43],"become":[3],"one":[4],"of":[5,8,24],"the":[6,15,18,59,145,178,186,190],"centers":[7],"attention":[9],"in":[10,17],"life":[11],"sciences":[12],"research":[13,229],"with":[14,58,113,177,206,219],"advancements":[16],"metabolomics":[19,164,194,228],"field.":[20],"A":[21],"vast":[22],"array":[23],"studies":[25],"analyzes":[26],"metabolites":[27],"and":[28,38,69,81,98,106,175,189,210,222,230],"their":[29],"interrelations":[30],"to":[31,46,120,217],"seek":[32],"explanations":[33],"for":[34,48,61,102,193,227,231],"various":[35,207],"biological":[36],"questions,":[37],"numerous":[39],"genome-scale":[40,141],"metabolic":[41,71,89,109,124,130,150,199],"been":[44],"assembled":[45],"serve":[47],"this":[49,55],"purpose.":[50],"The":[51,91,132,149],"increasing":[52],"focus":[53],"on":[54,83,197],"topic":[56],"comes":[57],"need":[60],"software":[62],"systems":[63],"that":[64],"store,":[65],"query,":[66],"browse,":[67],"analyze,":[68],"visualize":[70],"networks.":[72,110],"PathCase":[73],"Metabolomics":[74],"Analysis":[75,170],"Workbench":[76],"(PathCaseMAW)":[77],"is":[78,173,182,202,215,223],"built,":[79],"released,":[80],"running":[82],"a":[84,95,122,156,198,203,224],"manually":[85],"created":[86,137],"generic":[87],"mammalian":[88],"network.":[90,131],"PathCaseMAW":[92,111,146,201],"system":[93,205],"provides":[94],"database-enabled":[96],"framework":[97],"web-based":[99,187],"computational":[100],"tools":[101],"browsing,":[103],"querying,":[104],"analyzing,":[105],"visualizing":[107],"stored":[108],"editor,":[112],"its":[114],"user-friendly":[115],"interface,":[116],"can":[117,134,152],"be":[118,136,153],"used":[119],"create":[121],"new":[123],"network":[125,133,143,151],"and/or":[126],"update":[127],"an":[128,139,160],"existing":[129,140],"also":[135],"from":[138],"reconstructed":[142],"using":[144],"SBML":[147],"parser.":[148],"accessed":[154],"through":[155,184],"web":[157],"interface":[158,188],"or":[159],"iPad":[161,191],"application.":[162],"For":[163],"analysis,":[165],"Steady-State":[166],"Network":[168],"Dynamics":[169],"(SMDA)":[171],"algorithm":[172],"implemented":[174],"integrated":[176],"system.":[179],"SMDA":[180],"tool":[181,226],"accessible":[183],"both":[185],"application":[192],"analysis":[195],"based":[196],"profile.":[200],"comprehensive":[204],"data":[208,211],"input":[209],"access":[212],"sub-systems.":[213],"It":[214],"easy":[216],"work":[218],"by":[220],"design,":[221],"promising":[225],"educational":[232],"purposes.":[233]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
