{"id":"https://openalex.org/W1972804123","doi":"https://doi.org/10.1145/2506583.2506614","title":"Greedy Randomized Search Procedure to Sort Genomes using Symmetric, Almost-Symmetric and Unitary Inversions","display_name":"Greedy Randomized Search Procedure to Sort Genomes using Symmetric, Almost-Symmetric and Unitary Inversions","publication_year":2013,"publication_date":"2013-09-22","ids":{"openalex":"https://openalex.org/W1972804123","doi":"https://doi.org/10.1145/2506583.2506614","mag":"1972804123"},"language":"en","primary_location":{"id":"doi:10.1145/2506583.2506614","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2506583.2506614","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://inria.hal.science/hal-00922670","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052555109","display_name":"Ulisses Dias","orcid":"https://orcid.org/0000-0002-4763-3046"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Ulisses Dias","raw_affiliation_strings":["Institute of Computing, University of Campinas, Campinas - SP, Brazil","UNICAMP - Universidade Estadual de Campinas =  University of Campinas (Cidade Universit\u00e1ria 'Zeferino Vaz'\r\nCEP 13083-970 | Campinas-SP - Brazil)"],"affiliations":[{"raw_affiliation_string":"Institute of Computing, University of Campinas, Campinas - SP, Brazil","institution_ids":["https://openalex.org/I181391015"]},{"raw_affiliation_string":"UNICAMP - Universidade Estadual de Campinas =  University of Campinas (Cidade Universit\u00e1ria 'Zeferino Vaz'\r\nCEP 13083-970 | Campinas-SP - Brazil)","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047766466","display_name":"Christian Baudet","orcid":"https://orcid.org/0000-0002-9187-6512"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christian Baudet","raw_affiliation_strings":["CNRS UMR 5558 LBBE, Universit\u00e9 Lyon I, INRIA Bamboo Team, Lyon, France","Baobab (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)"],"affiliations":[{"raw_affiliation_string":"CNRS UMR 5558 LBBE, Universit\u00e9 Lyon I, INRIA Bamboo Team, Lyon, France","institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Baobab (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]},{"raw_affiliation_string":"BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I1326498283","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042140271","display_name":"Zanoni Dias","orcid":"https://orcid.org/0000-0003-3333-6822"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Zanoni Dias","raw_affiliation_strings":["Institute of Computing, University of Campinas, Campinas - SP, Brazil","UNICAMP - Universidade Estadual de Campinas =  University of Campinas (Cidade Universit\u00e1ria 'Zeferino Vaz'\r\nCEP 13083-970 | Campinas-SP - Brazil)"],"affiliations":[{"raw_affiliation_string":"Institute of Computing, University of Campinas, Campinas - SP, Brazil","institution_ids":["https://openalex.org/I181391015"]},{"raw_affiliation_string":"UNICAMP - Universidade Estadual de Campinas =  University of Campinas (Cidade Universit\u00e1ria 'Zeferino Vaz'\r\nCEP 13083-970 | Campinas-SP - Brazil)","institution_ids":["https://openalex.org/I181391015"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5052555109"],"corresponding_institution_ids":["https://openalex.org/I181391015"],"apc_list":null,"apc_paid":null,"fwci":0.82659521,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.78134057,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"181","last_page":"190"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.5720360279083252},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.5252208709716797},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.5190706849098206},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.45584625005722046},{"id":"https://openalex.org/keywords/greedy-algorithm","display_name":"Greedy algorithm","score":0.4464621841907501},{"id":"https://openalex.org/keywords/randomness","display_name":"Randomness","score":0.4218558073043823},{"id":"https://openalex.org/keywords/inversion","display_name":"Inversion (geology)","score":0.4152635335922241},{"id":"https://openalex.org/keywords/unitary-state","display_name":"Unitary state","score":0.4151632785797119},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.41313883662223816},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3921199440956116}],"concepts":[{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.5720360279083252},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.5252208709716797},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.5190706849098206},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.45584625005722046},{"id":"https://openalex.org/C51823790","wikidata":"https://www.wikidata.org/wiki/Q504353","display_name":"Greedy algorithm","level":2,"score":0.4464621841907501},{"id":"https://openalex.org/C125112378","wikidata":"https://www.wikidata.org/wiki/Q176640","display_name":"Randomness","level":2,"score":0.4218558073043823},{"id":"https://openalex.org/C1893757","wikidata":"https://www.wikidata.org/wiki/Q3653001","display_name":"Inversion (geology)","level":3,"score":0.4152635335922241},{"id":"https://openalex.org/C67820243","wikidata":"https://www.wikidata.org/wiki/Q179164","display_name":"Unitary state","level":2,"score":0.4151632785797119},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.41313883662223816},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3921199440956116},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C109007969","wikidata":"https://www.wikidata.org/wiki/Q749565","display_name":"Structural basin","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/2506583.2506614","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2506583.2506614","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics","raw_type":"proceedings-article"},{"id":"pmh:oai:HAL:hal-00922670v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-00922670","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://dl.acm.org/citation.cfm?doid=2506583.2506614","raw_type":"Conference papers"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-00922670v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-00922670","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://dl.acm.org/citation.cfm?doid=2506583.2506614","raw_type":"Conference papers"},"sustainable_development_goals":[{"display_name":"Sustainable cities and communities","id":"https://metadata.un.org/sdg/11","score":0.4699999988079071}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1516878686","https://openalex.org/W1559956479","https://openalex.org/W1596494793","https://openalex.org/W1603273197","https://openalex.org/W1835996947","https://openalex.org/W1890701999","https://openalex.org/W1895774903","https://openalex.org/W1977846845","https://openalex.org/W1979198104","https://openalex.org/W1980890118","https://openalex.org/W1989978323","https://openalex.org/W1990321397","https://openalex.org/W2001748448","https://openalex.org/W2023749136","https://openalex.org/W2025268107","https://openalex.org/W2029391125","https://openalex.org/W2035933706","https://openalex.org/W2061910105","https://openalex.org/W2079641336","https://openalex.org/W2081725015","https://openalex.org/W2090275183","https://openalex.org/W2094485034","https://openalex.org/W2099861483","https://openalex.org/W2103333868","https://openalex.org/W2107282968","https://openalex.org/W2107801875","https://openalex.org/W2109293843","https://openalex.org/W2130849966","https://openalex.org/W2518938724","https://openalex.org/W2561675875","https://openalex.org/W2570388581","https://openalex.org/W2997776631","https://openalex.org/W3104567486"],"related_works":["https://openalex.org/W3183948672","https://openalex.org/W3173606202","https://openalex.org/W3110381201","https://openalex.org/W2948807893","https://openalex.org/W2778153218","https://openalex.org/W2758277628","https://openalex.org/W1531601525","https://openalex.org/W1827895227","https://openalex.org/W4285104409","https://openalex.org/W4210317843"],"abstract_inverted_index":{"International":[0],"audience":[1]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
