{"id":"https://openalex.org/W2051265409","doi":"https://doi.org/10.1145/2506583.2506585","title":"An Image-Text Approach for Extracting Experimental Evidence of Protein-Protein Interactions in the Biomedical Literature","display_name":"An Image-Text Approach for Extracting Experimental Evidence of Protein-Protein Interactions in the Biomedical Literature","publication_year":2013,"publication_date":"2013-09-22","ids":{"openalex":"https://openalex.org/W2051265409","doi":"https://doi.org/10.1145/2506583.2506585","mag":"2051265409"},"language":"en","primary_location":{"id":"doi:10.1145/2506583.2506585","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2506583.2506585","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048890014","display_name":"Luis D. Lopez","orcid":"https://orcid.org/0009-0009-0729-9993"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luis D. Lopez","raw_affiliation_strings":["Dept. of Computer and Information Sciences, University of Delaware, Newark, DE 19716 United States","Department of Computer and Information Sciences, University of Delaware, Newark, DE 19716, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer and Information Sciences, University of Delaware, Newark, DE 19716 United States","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, DE 19716, United States","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101500646","display_name":"Jingyi Yu","orcid":"https://orcid.org/0000-0001-9198-6853"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jingyi Yu","raw_affiliation_strings":["Dept. of Computer and Information Sciences, University of Delaware, Newark, DE 19716 United States","Department of Computer and Information Sciences, University of Delaware, Newark, DE 19716, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer and Information Sciences, University of Delaware, Newark, DE 19716 United States","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, DE 19716, United States","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001355963","display_name":"Cecilia N. Arighi","orcid":"https://orcid.org/0000-0002-0803-4817"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cecilia N. Arighi","raw_affiliation_strings":["Dept. of Computer and Information Sciences University of Delaware Newark, DE 19716 United States and Center for Bioinformatics and Computational Biology, University of Delaware Newark, DE 19711 United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer and Information Sciences University of Delaware Newark, DE 19716 United States and Center for Bioinformatics and Computational Biology, University of Delaware Newark, DE 19711 United States","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028161578","display_name":"Manabu Torii","orcid":"https://orcid.org/0000-0002-4825-0696"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Manabu Torii","raw_affiliation_strings":["Dept. of Computer and Information Sciences University of Delaware Newark, DE 19716 United States and Center for Bioinformatics and Computational Biology, University of Delaware Newark, DE 19711 United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer and Information Sciences University of Delaware Newark, DE 19716 United States and Center for Bioinformatics and Computational Biology, University of Delaware Newark, DE 19711 United States","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027009667","display_name":"K. Vijay\u2010Shanker","orcid":"https://orcid.org/0000-0003-0958-3073"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K. Vijay-Shanker","raw_affiliation_strings":["Dept. of Computer and Information Sciences, University of Delaware Newark, DE 19716 United States","Department of Computer and Information Sciences, University of Delaware, Newark, DE 19716, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer and Information Sciences, University of Delaware Newark, DE 19716 United States","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, DE 19716, United States","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027838788","display_name":"Hongzhan Huang","orcid":"https://orcid.org/0000-0001-9594-9304"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongzhan Huang","raw_affiliation_strings":["Dept. of Computer and Information Sciences, University of Delaware Newark, DE 19716 United States and Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711 United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer and Information Sciences, University of Delaware Newark, DE 19716 United States and Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711 United States","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053761444","display_name":"Cathy Wu","orcid":"https://orcid.org/0000-0001-6379-8601"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cathy H. Wu","raw_affiliation_strings":["Dept. of Computer and Information Sciences, University of Delaware Newark, DE 19716 United States and Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711 United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer and Information Sciences, University of Delaware Newark, DE 19716 United States and Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711 United States","institution_ids":["https://openalex.org/I86501945"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I86501945"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"412","last_page":"418"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9789999723434448,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9761999845504761,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7698736190795898},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.635407567024231},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6261793375015259},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5866433382034302},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39617905020713806},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.376767098903656}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7698736190795898},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.635407567024231},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6261793375015259},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5866433382034302},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39617905020713806},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.376767098903656},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2506583.2506585","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2506583.2506585","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W26591655","https://openalex.org/W1529842856","https://openalex.org/W1563088657","https://openalex.org/W1976937534","https://openalex.org/W1982291220","https://openalex.org/W1995683190","https://openalex.org/W1999633951","https://openalex.org/W2023704244","https://openalex.org/W2032235169","https://openalex.org/W2037442572","https://openalex.org/W2064030835","https://openalex.org/W2075027317","https://openalex.org/W2097106271","https://openalex.org/W2113031692","https://openalex.org/W2126781427","https://openalex.org/W2133990480","https://openalex.org/W2140617045","https://openalex.org/W2144896636","https://openalex.org/W2147880316","https://openalex.org/W2153635508","https://openalex.org/W2154142897","https://openalex.org/W2168598710","https://openalex.org/W2168905447","https://openalex.org/W2171970585","https://openalex.org/W2916767477","https://openalex.org/W4297922946","https://openalex.org/W6601052559"],"related_works":["https://openalex.org/W2366107444","https://openalex.org/W4388145910","https://openalex.org/W2381570729","https://openalex.org/W1976205134","https://openalex.org/W4248336175","https://openalex.org/W2031260042","https://openalex.org/W2391445434","https://openalex.org/W3009369890","https://openalex.org/W4312490297","https://openalex.org/W2062212388"],"abstract_inverted_index":{"Proteins":[0],"are":[1,14],"complex":[2],"biological":[3],"polymers":[4],"that":[5,112,199],"mediate":[6],"virtually":[7],"all":[8],"cellular":[9],"functions.":[10],"Typically":[11],"these":[12],"functions":[13],"modulated":[15],"by":[16,25,109,190],"protein-protein":[17],"interactions":[18],"(PPI).":[19],"Tremendous":[20],"efforts":[21],"have":[22],"been":[23],"made":[24],"life":[26],"scientists":[27],"to":[28,127,164],"detect":[29],"PPIs":[30],"through":[31,39],"different":[32,147],"experimental":[33,68,103,120],"approaches":[34,80],"and":[35,96,122,137,141,170],"document":[36],"the":[37,42,88,110,144,158,191,204],"results":[38,121],"publications.":[40],"On":[41],"informatics":[43],"front,":[44],"however,":[45],"there":[46],"lacks":[47],"an":[48],"effective":[49],"means":[50],"for":[51,66,71,100,173,207],"retrieving":[52],"PPI":[53,73,102,174,211],"information":[54,126],"from":[55,74,78,92,183],"published":[56],"literatures.":[57],"In":[58],"this":[59],"work":[60,106],"we":[61,85,156,197],"present":[62],"a":[63,150,166,180,184],"novel":[64],"framework":[65],"identifying":[67,101],"methods":[69],"employed":[70],"analyzing":[72],"biomedical":[75,113],"articles.":[76],"Different":[77],"state-of-the-art":[79],"based":[81],"only":[82],"on":[83],"text,":[84],"explore":[86],"using":[87,149],"combination":[89],"of":[90,119,186],"attributes":[91],"figures,":[93],"figure":[94],"captions,":[95],"text":[97],"within":[98],"figures":[99,114,209],"methods.":[104,212],"Our":[105],"is":[107],"motivated":[108],"observation":[111],"often":[115],"constitute":[116],"direct":[117],"evidence":[118],"therefore":[123],"provide":[124],"complementary":[125],"texts.":[128],"We":[129,177],"start":[130],"with":[131,161,210],"automatically":[132],"extracting":[133],"unimodal":[134],"panels":[135],"(subfigures)":[136],"their":[138],"associated":[139],"subcaptions":[140],"then":[142],"classifying":[143],"subfigure":[145,159],"into":[146],"types":[148,160],"proposed":[151],"hierarchical":[152],"image":[153],"taxonomy.":[154],"Next,":[155],"combine":[157],"text-based":[162],"features":[163],"form":[165],"hybrid":[167],"feature":[168],"descriptor":[169],"use":[171],"it":[172],"method":[175],"classification.":[176],"further":[178],"construct":[179],"dataset":[181],"starting":[182],"set":[185],"2,256":[187],"documents":[188],"provided":[189],"molecular":[192],"interaction":[193],"database":[194],"MINT.":[195],"Here":[196],"show":[198],"our":[200],"new":[201],"approach":[202],"outperforms":[203],"text-only":[205],"solution":[206],"associating":[208]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
