{"id":"https://openalex.org/W1970705287","doi":"https://doi.org/10.1145/2492517.2500281","title":"Combining information extraction and text mining for cancer biomarker detection","display_name":"Combining information extraction and text mining for cancer biomarker detection","publication_year":2013,"publication_date":"2013-08-25","ids":{"openalex":"https://openalex.org/W1970705287","doi":"https://doi.org/10.1145/2492517.2500281","mag":"1970705287"},"language":"en","primary_location":{"id":"doi:10.1145/2492517.2500281","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2492517.2500281","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2013 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036348166","display_name":"Khaled Dawoud","orcid":"https://orcid.org/0000-0002-5488-8688"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Khaled Dawoud","raw_affiliation_strings":["University of Calgary, Calgary, Alberta, Canada","Department of Computer Science University of Calgary Calgary, AB, Canada#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Calgary, Calgary, Alberta, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Department of Computer Science University of Calgary Calgary, AB, Canada#TAB#","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008929449","display_name":"Shang Gao","orcid":"https://orcid.org/0000-0002-2947-7780"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Shang Gao","raw_affiliation_strings":["University of Calgary, Calgary, Alberta, Canada","Department of Computer Science University of Calgary Calgary, AB, Canada#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Calgary, Calgary, Alberta, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Department of Computer Science University of Calgary Calgary, AB, Canada#TAB#","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005554705","display_name":"Ala Qabaja","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ala Qabaja","raw_affiliation_strings":["University of Calgary, Calgary, Alberta, Canada","Department of Computer Science University of Calgary Calgary, AB, Canada#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Calgary, Calgary, Alberta, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Department of Computer Science University of Calgary Calgary, AB, Canada#TAB#","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034281379","display_name":"Panagiotis Karampelas","orcid":"https://orcid.org/0000-0003-1684-7612"},"institutions":[{"id":"https://openalex.org/I25055547","display_name":"Hellenic American University","ror":"https://ror.org/0423r3m86","country_code":"US","type":"education","lineage":["https://openalex.org/I25055547"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Panagiotis Karampelas","raw_affiliation_strings":["Hellenic American University, Manchester, NH","Dept. of Information Technology, Hellenic American University, Manchester, NH, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hellenic American University, Manchester, NH","institution_ids":["https://openalex.org/I25055547"]},{"raw_affiliation_string":"Dept. of Information Technology, Hellenic American University, Manchester, NH, USA","institution_ids":["https://openalex.org/I25055547"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066265052","display_name":"Reda Alhajj","orcid":"https://orcid.org/0000-0001-6657-9738"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]},{"id":"https://openalex.org/I25055547","display_name":"Hellenic American University","ror":"https://ror.org/0423r3m86","country_code":"US","type":"education","lineage":["https://openalex.org/I25055547"]},{"id":"https://openalex.org/I904090387","display_name":"Global University","ror":"https://ror.org/04frhb927","country_code":"LB","type":"education","lineage":["https://openalex.org/I904090387"]}],"countries":["CA","LB","US"],"is_corresponding":false,"raw_author_name":"Reda Alhajj","raw_affiliation_strings":["University of Calgary, Calgary, Alberta, Canada and Hellenic American University, Manchester, NH and Global University, Beirut, Lebanon"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Calgary, Calgary, Alberta, Canada and Hellenic American University, Manchester, NH and Global University, Beirut, Lebanon","institution_ids":["https://openalex.org/I168635309","https://openalex.org/I25055547","https://openalex.org/I904090387"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0943507,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"13","issue":null,"first_page":"948","last_page":"955"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9728999733924866,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.802689790725708},{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.7051963210105896},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.6735201478004456},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5642450451850891},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5556309223175049},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.5463609099388123},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.5026760101318359},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.4768446683883667},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4685707092285156},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4639301896095276},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.45609015226364136},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.44942545890808105},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.43411827087402344},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2718663513660431},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2368735671043396}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.802689790725708},{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.7051963210105896},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.6735201478004456},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5642450451850891},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5556309223175049},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.5463609099388123},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.5026760101318359},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.4768446683883667},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4685707092285156},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4639301896095276},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.45609015226364136},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.44942545890808105},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.43411827087402344},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2718663513660431},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2368735671043396},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2492517.2500281","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2492517.2500281","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2013 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1547083634","https://openalex.org/W1580481679","https://openalex.org/W1585743408","https://openalex.org/W1790194223","https://openalex.org/W1814520009","https://openalex.org/W1999117234","https://openalex.org/W1999424862","https://openalex.org/W2009341227","https://openalex.org/W2017777108","https://openalex.org/W2030871208","https://openalex.org/W2031627786","https://openalex.org/W2031868269","https://openalex.org/W2032898843","https://openalex.org/W2037837681","https://openalex.org/W2040814250","https://openalex.org/W2080856991","https://openalex.org/W2097255042","https://openalex.org/W2097928951","https://openalex.org/W2105892820","https://openalex.org/W2109070394","https://openalex.org/W2109276980","https://openalex.org/W2127479124","https://openalex.org/W2133456867","https://openalex.org/W2135063148","https://openalex.org/W2137143372","https://openalex.org/W2139259976","https://openalex.org/W2140601463","https://openalex.org/W2140703956","https://openalex.org/W2144001613","https://openalex.org/W2155461849","https://openalex.org/W2171667218","https://openalex.org/W2418239156","https://openalex.org/W6660147205","https://openalex.org/W6674554169"],"related_works":["https://openalex.org/W2357854711","https://openalex.org/W4243448361","https://openalex.org/W2051700896","https://openalex.org/W1552255772","https://openalex.org/W2111524952","https://openalex.org/W2054759342","https://openalex.org/W2016355461","https://openalex.org/W4234690372","https://openalex.org/W4239551281","https://openalex.org/W2103484298"],"abstract_inverted_index":{"Information":[0],"technology":[1],"is":[2,31,60,99,162],"advancing":[3],"faster":[4],"than":[5],"anticipated.":[6],"The":[7,257],"amount":[8],"of":[9,43,62,69,84,101,117,164,169,268],"data":[10,50,70,118,129],"captured":[11],"and":[12,26,57,130,248,254,266],"stored":[13],"in":[14,47,53,109,242],"electronic":[15],"form":[16],"by":[17,156,222],"far":[18],"exceeds":[19],"the":[20,44,48,63,85,94,102,110,131,136,153,167,174,185,190,197,209,214,220,224,228,239,264,269],"capabilities":[21],"available":[22],"for":[23,35,76,123,203],"comprehensive":[24],"analysis":[25],"effective":[27],"knowledge":[28,45,78],"discovery.":[29],"There":[30,113],"always":[32],"a":[33,158,170,178],"need":[34],"new":[36],"sophisticated":[37],"techniques":[38],"that":[39,71,79,119],"could":[40,120],"extract":[41,189],"more":[42],"hidden":[46],"raw":[49],"collected":[51],"continuously":[52],"huge":[54,67],"repositories.":[55],"Biomedicine":[56],"computational":[58],"biology":[59],"one":[61,100],"domains":[64],"overwhelmed":[65],"with":[66,193],"amounts":[68],"should":[72],"be":[73,121,232],"carefully":[74],"analyzed":[75,122,215,233],"valuable":[77],"may":[80],"help":[81],"uncovering":[82],"many":[83],"still":[86],"unknown":[87],"information":[88],"related":[89,134,176,218,251],"to":[90,135,177,188,200,208,219,234,252],"various":[91],"diseases":[92],"threatening":[93],"human":[95],"body.":[96],"Biomarker":[97],"detection":[98],"areas":[103],"which":[104,161,230],"have":[105],"received":[106],"considerable":[107],"attention":[108],"research":[111,139],"community.":[112],"are":[114,260],"two":[115],"sources":[116],"biomarker":[124],"detection,":[125],"namely":[126],"gene":[127],"expression":[128],"rich":[132],"literature":[133],"domain.":[137],"Our":[138],"group":[140],"has":[141],"reported":[142,258],"achievements":[143],"analyzing":[144],"both":[145],"domains.":[146],"In":[147],"this":[148,243],"paper,":[149,244],"we":[150,245],"concentrate":[151],"on":[152],"latter":[154],"domain":[155,181,201,221],"describing":[157],"powerful":[159],"tool":[160],"capable":[163],"extracting":[165],"from":[166,213],"content":[168],"repository":[171],"(like":[172],"PubMed)":[173],"parts":[175],"given":[179],"specific":[180],"like":[182],"cancer,":[183],"analyze":[184],"retrieved":[186],"text":[187,216],"key":[191],"terms":[192,199],"high":[194],"frequency,":[195],"present":[196],"extracted":[198,249],"experts":[202],"selecting":[204],"those":[205],"most":[206],"relevant":[207,225],"investigated":[210],"domain,":[211],"retrieve":[212],"molecules":[217],"considering":[223],"terms,":[226],"derive":[227],"network":[229],"will":[231],"identify":[235],"potential":[236],"biomarkers.":[237],"For":[238],"work":[240],"described":[241],"considered":[246],"PubMed":[247],"abstracts":[250],"prostate":[253],"breast":[255],"cancer.":[256],"results":[259],"promising;":[261],"they":[262],"demonstrate":[263],"effectiveness":[265],"applicability":[267],"proposed":[270],"approach.":[271]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
