{"id":"https://openalex.org/W2069005336","doi":"https://doi.org/10.1145/2488551.2488586","title":"P-Biblio-MetReS, a parallel data mining tool for the reconstruction of molecular networks","display_name":"P-Biblio-MetReS, a parallel data mining tool for the reconstruction of molecular networks","publication_year":2013,"publication_date":"2013-09-11","ids":{"openalex":"https://openalex.org/W2069005336","doi":"https://doi.org/10.1145/2488551.2488586","mag":"2069005336"},"language":"en","primary_location":{"id":"doi:10.1145/2488551.2488586","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2488551.2488586","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 20th European MPI Users' Group Meeting","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051533335","display_name":"Ivan Teixid\u00f3","orcid":"https://orcid.org/0000-0002-4880-9031"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Ivan Teixid\u00f3","raw_affiliation_strings":["University of Lleida, Lleida, Spain","University of Lleida , Lleida , Spain"],"affiliations":[{"raw_affiliation_string":"University of Lleida, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]},{"raw_affiliation_string":"University of Lleida , Lleida , Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072002693","display_name":"Ana Usi\u00e9","orcid":"https://orcid.org/0000-0002-3364-9434"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Anabel Usi\u00e9","raw_affiliation_strings":["University of Lleida, Lleida, Spain","University of Lleida , Lleida , Spain"],"affiliations":[{"raw_affiliation_string":"University of Lleida, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]},{"raw_affiliation_string":"University of Lleida , Lleida , Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018348334","display_name":"Josep L. L\u00e9rida","orcid":"https://orcid.org/0000-0002-9352-9338"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Josep Ll. L\u00e9rida","raw_affiliation_strings":["University of Lleida, Lleida, Spain","University of Lleida , Lleida , Spain"],"affiliations":[{"raw_affiliation_string":"University of Lleida, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]},{"raw_affiliation_string":"University of Lleida , Lleida , Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070309620","display_name":"Francesc Solsona","orcid":"https://orcid.org/0000-0002-4830-9184"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Francesc Solsona","raw_affiliation_strings":["University of Lleida, Lleida, Spain","University of Lleida , Lleida , Spain"],"affiliations":[{"raw_affiliation_string":"University of Lleida, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]},{"raw_affiliation_string":"University of Lleida , Lleida , Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057209620","display_name":"Jorge Comas","orcid":"https://orcid.org/0000-0003-3344-1729"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jorge Comas","raw_affiliation_strings":["University of Lleida, Lleida, Spain","University of Lleida , Lleida , Spain"],"affiliations":[{"raw_affiliation_string":"University of Lleida, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]},{"raw_affiliation_string":"University of Lleida , Lleida , Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070879539","display_name":"N\u00e9stor V. Torres","orcid":"https://orcid.org/0000-0002-7594-9515"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Nestor Torres","raw_affiliation_strings":["University of Lleida, Lleida, Spain","University of Lleida , Lleida , Spain"],"affiliations":[{"raw_affiliation_string":"University of Lleida, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]},{"raw_affiliation_string":"University of Lleida , Lleida , Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023911818","display_name":"Hiren Karathia","orcid":"https://orcid.org/0000-0003-3607-6552"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Hiren Karathia","raw_affiliation_strings":["University of Lleida, Lleida, Spain","University of Lleida , Lleida , Spain"],"affiliations":[{"raw_affiliation_string":"University of Lleida, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]},{"raw_affiliation_string":"University of Lleida , Lleida , Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020840486","display_name":"Rui Alves","orcid":"https://orcid.org/0000-0002-8112-5184"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Rui Alves","raw_affiliation_strings":["University of Lleida, Lleida, Spain","University of Lleida , Lleida , Spain"],"affiliations":[{"raw_affiliation_string":"University of Lleida, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]},{"raw_affiliation_string":"University of Lleida , Lleida , Spain","institution_ids":["https://openalex.org/I15766328"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5051533335"],"corresponding_institution_ids":["https://openalex.org/I15766328"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08561897,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"247","last_page":"252"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8326482772827148},{"id":"https://openalex.org/keywords/thread","display_name":"Thread (computing)","score":0.6883395314216614},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4991018772125244},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4204613268375397},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.37332144379615784},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.09871268272399902}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8326482772827148},{"id":"https://openalex.org/C138101251","wikidata":"https://www.wikidata.org/wiki/Q213092","display_name":"Thread (computing)","level":2,"score":0.6883395314216614},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4991018772125244},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4204613268375397},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.37332144379615784},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.09871268272399902}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2488551.2488586","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2488551.2488586","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 20th European MPI Users' Group Meeting","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5199999809265137,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W42742550","https://openalex.org/W1552912989","https://openalex.org/W1996935079","https://openalex.org/W2027943492","https://openalex.org/W2050453845","https://openalex.org/W2057545775","https://openalex.org/W2065807795","https://openalex.org/W2111776022","https://openalex.org/W2121531691","https://openalex.org/W2127603354","https://openalex.org/W2147585745","https://openalex.org/W2148395543","https://openalex.org/W2152482800","https://openalex.org/W2160668718"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W2023832055","https://openalex.org/W2082485924"],"abstract_inverted_index":{"Biblio-MetReS":[0],"is":[1,26],"a":[2,62],"single-thread":[3],"data":[4],"mining":[5,18,53],"application":[6,25,69],"that":[7],"facilitates":[8],"the":[9,36,54,65,68],"reconstruction":[10],"of":[11,20,38,59,67],"molecular":[12],"networks":[13],"based":[14],"on":[15],"automated":[16],"text":[17],"analysis":[19],"published":[21],"scientific":[22,60],"literature.":[23],"This":[24],"very":[27],"CPU-intensive,":[28],"requiring":[29],"High":[30],"Performace":[31],"Computing":[32],"(HPC).":[33],"Due":[34],"to":[35],"amount":[37],"execution":[39],"tasks,":[40],"it":[41],"can":[42],"be":[43,71],"quite":[44],"slow.":[45],"Those":[46],"tasks":[47],"are":[48],"repetitive":[49],"and":[50],"consist":[51],"in":[52],"information":[55],"from":[56],"large":[57],"sets":[58],"documents,":[61],"process":[63],"where":[64],"time-cost":[66],"could":[70],"improved":[72],"through":[73],"paralellization.":[74]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
