{"id":"https://openalex.org/W2044487956","doi":"https://doi.org/10.1145/2488551.2488577","title":"Algorithms for large-scale whole genome association analysis","display_name":"Algorithms for large-scale whole genome association analysis","publication_year":2013,"publication_date":"2013-09-11","ids":{"openalex":"https://openalex.org/W2044487956","doi":"https://doi.org/10.1145/2488551.2488577","mag":"2044487956"},"language":"en","primary_location":{"id":"doi:10.1145/2488551.2488577","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2488551.2488577","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 20th European MPI Users' Group Meeting","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1304.2272","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037602108","display_name":"Elmar Peise","orcid":null},"institutions":[{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Elmar Peise","raw_affiliation_strings":["RWTH Aachen University, Aachen, Germany","AICES, RWTH Aachen"],"affiliations":[{"raw_affiliation_string":"RWTH Aachen University, Aachen, Germany","institution_ids":["https://openalex.org/I887968799"]},{"raw_affiliation_string":"AICES, RWTH Aachen","institution_ids":["https://openalex.org/I887968799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008174390","display_name":"Diego Fabregat","orcid":null},"institutions":[{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Diego Fabregat-Traver","raw_affiliation_strings":["RWTH Aachen University, Aachen, Germany","AICES, RWTH Aachen"],"affiliations":[{"raw_affiliation_string":"RWTH Aachen University, Aachen, Germany","institution_ids":["https://openalex.org/I887968799"]},{"raw_affiliation_string":"AICES, RWTH Aachen","institution_ids":["https://openalex.org/I887968799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003919256","display_name":"Yurii S. Aulchenko","orcid":"https://orcid.org/0000-0002-7899-1575"},"institutions":[{"id":"https://openalex.org/I4210116466","display_name":"Institute of Cytology and Genetics","ror":"https://ror.org/0277xgb12","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I1313323035","https://openalex.org/I188973947","https://openalex.org/I4210116466","https://openalex.org/I4210127387","https://openalex.org/I4210129690"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Yurii Aulchenko","raw_affiliation_strings":["Institute of Cytology and Genetics, Novosibirsk, Russia","Institute of Cytology and Genetics, Novosibirsk"],"affiliations":[{"raw_affiliation_string":"Institute of Cytology and Genetics, Novosibirsk, Russia","institution_ids":["https://openalex.org/I4210116466"]},{"raw_affiliation_string":"Institute of Cytology and Genetics, Novosibirsk","institution_ids":["https://openalex.org/I4210116466"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048393932","display_name":"Paolo Bientinesi","orcid":"https://orcid.org/0000-0002-4972-7097"},"institutions":[{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Paolo Bientinesi","raw_affiliation_strings":["RWTH Aachen University, Aachen, Germany","AICES, RWTH Aachen"],"affiliations":[{"raw_affiliation_string":"RWTH Aachen University, Aachen, Germany","institution_ids":["https://openalex.org/I887968799"]},{"raw_affiliation_string":"AICES, RWTH Aachen","institution_ids":["https://openalex.org/I887968799"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5037602108"],"corresponding_institution_ids":["https://openalex.org/I887968799"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08116467,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"229","last_page":"234"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5568138360977173},{"id":"https://openalex.org/keywords/covariance","display_name":"Covariance","score":0.495762437582016},{"id":"https://openalex.org/keywords/covariance-matrix","display_name":"Covariance matrix","score":0.48836132884025574},{"id":"https://openalex.org/keywords/genome-wide-association-study","display_name":"Genome-wide association study","score":0.46093881130218506},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4546118974685669},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.44016233086586},{"id":"https://openalex.org/keywords/genetic-association","display_name":"Genetic association","score":0.4309820830821991},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.42270827293395996},{"id":"https://openalex.org/keywords/genetic-architecture","display_name":"Genetic architecture","score":0.4180547893047333},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4178622364997864},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.4052444100379944},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3457200527191162},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3170114755630493},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3008980453014374},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.231255441904068},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.21315234899520874},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16582438349723816},{"id":"https://openalex.org/keywords/quantitative-trait-locus","display_name":"Quantitative trait locus","score":0.16533803939819336},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.1600666642189026},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.11840775609016418}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5568138360977173},{"id":"https://openalex.org/C178650346","wikidata":"https://www.wikidata.org/wiki/Q201984","display_name":"Covariance","level":2,"score":0.495762437582016},{"id":"https://openalex.org/C185142706","wikidata":"https://www.wikidata.org/wiki/Q1134404","display_name":"Covariance matrix","level":2,"score":0.48836132884025574},{"id":"https://openalex.org/C106208931","wikidata":"https://www.wikidata.org/wiki/Q1098876","display_name":"Genome-wide association study","level":5,"score":0.46093881130218506},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4546118974685669},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.44016233086586},{"id":"https://openalex.org/C186413461","wikidata":"https://www.wikidata.org/wiki/Q744727","display_name":"Genetic association","level":5,"score":0.4309820830821991},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.42270827293395996},{"id":"https://openalex.org/C9287583","wikidata":"https://www.wikidata.org/wiki/Q5532883","display_name":"Genetic architecture","level":4,"score":0.4180547893047333},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4178622364997864},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.4052444100379944},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3457200527191162},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3170114755630493},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3008980453014374},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.231255441904068},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.21315234899520874},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16582438349723816},{"id":"https://openalex.org/C81941488","wikidata":"https://www.wikidata.org/wiki/Q853421","display_name":"Quantitative trait locus","level":3,"score":0.16533803939819336},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.1600666642189026},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.11840775609016418},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1145/2488551.2488577","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2488551.2488577","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 20th European MPI Users' Group Meeting","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:1304.2272","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1304.2272","pdf_url":"https://arxiv.org/pdf/1304.2272","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"mag:2044487956","is_oa":true,"landing_page_url":"https://arxiv.org/pdf/1304.2272v1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.770.1081","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.770.1081","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arxiv.org/pdf/1304.2272.pdf","raw_type":"text"},{"id":"pmh:oai:publications.rwth-aachen.de:444392","is_oa":false,"landing_page_url":"https://publications.rwth-aachen.de/record/444392","pdf_url":null,"source":{"id":"https://openalex.org/S4306401362","display_name":"RWTH Publications (RWTH Aachen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887968799","host_organization_name":"RWTH Aachen University","host_organization_lineage":["https://openalex.org/I887968799"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"EuroMPI '13 : Proceedings of the 20th European MPI Users Group Meeting ; Madrid 15-18 September 2013 / Dongarra, Jack<br/>20. European MPI Users' Group Meeting, EuroMPI '13, Madrid, Spain, 2013-09-15 - 2013-09-18","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"doi:10.48550/arxiv.1304.2272","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1304.2272","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1304.2272","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1304.2272","pdf_url":"https://arxiv.org/pdf/1304.2272","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1968034072","https://openalex.org/W2026940984","https://openalex.org/W2048578647","https://openalex.org/W2079927753","https://openalex.org/W2093529653","https://openalex.org/W2113784410","https://openalex.org/W2117446594","https://openalex.org/W2134036574","https://openalex.org/W2161245845","https://openalex.org/W2949711640"],"related_works":["https://openalex.org/W2963840514","https://openalex.org/W2068061617","https://openalex.org/W2072761266","https://openalex.org/W12599010","https://openalex.org/W2737500854","https://openalex.org/W2966338033","https://openalex.org/W2015873366","https://openalex.org/W2146643231","https://openalex.org/W2249852069","https://openalex.org/W2438256301","https://openalex.org/W3214450128","https://openalex.org/W2582019778","https://openalex.org/W1129668553","https://openalex.org/W2012245597","https://openalex.org/W2339302","https://openalex.org/W2125027134","https://openalex.org/W2070359206","https://openalex.org/W2102213696","https://openalex.org/W2950232131","https://openalex.org/W2108352360"],"abstract_inverted_index":{"In":[0,95],"order":[1],"to":[2,111],"associate":[3],"complex":[4],"traits":[5],"with":[6],"genetic":[7],"polymorphisms,":[8],"genome-wide":[9],"association":[10],"studies":[11],"process":[12],"huge":[13],"datasets":[14],"involving":[15],"tens":[16],"of":[17,19,24,35,45,51,53,55,69,91,129,145],"thousands":[18],"individuals":[20],"genotyped":[21],"for":[22,80,101],"millions":[23],"polymorphisms.":[25],"When":[26],"handling":[27],"these":[28,137],"datasets,":[29],"which":[30,58],"exceed":[31],"the":[32,49,67,70,87,120,126,143],"main":[33,89,127],"memory":[34,90,128,132],"contemporary":[36],"computers,":[37],"one":[38],"faces":[39],"two":[40],"distinct":[41],"challenges:":[42,103],"1)":[43],"Millions":[44],"polymorphisms":[46],"come":[47],"at":[48],"cost":[50],"hundreds":[52],"Gigabytes":[54],"genotype":[56,105],"data,":[57],"can":[59,83],"only":[60,84],"be":[61],"kept":[62,124],"in":[63,86],"secondary":[64,112],"storage;":[65],"2)":[66],"relatedness":[68],"test":[71],"population":[72],"is":[73,107,123],"represented":[74],"by":[75],"a":[76,92,115,130],"covariance":[77,121],"matrix,":[78],"which,":[79],"large":[81],"populations,":[82],"fit":[85],"combined":[88],"distributed":[93,131],"architecture.":[94],"this":[96],"paper,":[97],"we":[98],"present":[99],"solutions":[100],"both":[102],"The":[104],"data":[106],"streamed":[108],"from":[109],"and":[110,141],"storage":[113],"using":[114],"double":[116],"buffering":[117],"technique,":[118],"while":[119],"matrix":[122],"across":[125],"system.":[133],"We":[134],"show":[135],"that":[136],"methods":[138],"sustain":[139],"high-performance":[140],"allow":[142],"analysis":[144],"enormous":[146],"datasets.":[147]},"counts_by_year":[],"updated_date":"2026-03-17T09:09:15.849793","created_date":"2025-10-10T00:00:00"}
