{"id":"https://openalex.org/W2018431971","doi":"https://doi.org/10.1145/2484762.2484817","title":"A sustainable national gateway for biological computation","display_name":"A sustainable national gateway for biological computation","publication_year":2013,"publication_date":"2013-07-22","ids":{"openalex":"https://openalex.org/W2018431971","doi":"https://doi.org/10.1145/2484762.2484817","mag":"2018431971"},"language":"en","primary_location":{"id":"doi:10.1145/2484762.2484817","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2484762.2484817","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025611053","display_name":"James Taylor","orcid":"https://orcid.org/0000-0001-5079-840X"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"James Taylor","raw_affiliation_strings":["Emory University"],"affiliations":[{"raw_affiliation_string":"Emory University","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065292926","display_name":"Anton Nekrutenko","orcid":"https://orcid.org/0000-0002-5987-8032"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anton Nekrutenko","raw_affiliation_strings":["Penn State University","#N#Penn State University#N#"],"affiliations":[{"raw_affiliation_string":"Penn State University","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"#N#Penn State University#N#","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030446017","display_name":"Nate Coraor","orcid":null},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nate Coraor","raw_affiliation_strings":["Penn State University","#N#Penn State University#N#"],"affiliations":[{"raw_affiliation_string":"Penn State University","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"#N#Penn State University#N#","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037662959","display_name":"Philip D. Blood","orcid":"https://orcid.org/0000-0002-9129-1223"},"institutions":[{"id":"https://openalex.org/I35765314","display_name":"Pittsburgh Supercomputing Center","ror":"https://ror.org/04tac1482","country_code":"US","type":"facility","lineage":["https://openalex.org/I35765314"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philip D. Blood","raw_affiliation_strings":["Pittsburgh Supercomputing Center","[Pittsburgh Supercomputing Center]"],"affiliations":[{"raw_affiliation_string":"Pittsburgh Supercomputing Center","institution_ids":["https://openalex.org/I35765314"]},{"raw_affiliation_string":"[Pittsburgh Supercomputing Center]","institution_ids":["https://openalex.org/I35765314"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002568034","display_name":"Alex Ropelewski","orcid":null},"institutions":[{"id":"https://openalex.org/I35765314","display_name":"Pittsburgh Supercomputing Center","ror":"https://ror.org/04tac1482","country_code":"US","type":"facility","lineage":["https://openalex.org/I35765314"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex Ropelewski","raw_affiliation_strings":["Pittsburgh Supercomputing Center","[Pittsburgh Supercomputing Center]"],"affiliations":[{"raw_affiliation_string":"Pittsburgh Supercomputing Center","institution_ids":["https://openalex.org/I35765314"]},{"raw_affiliation_string":"[Pittsburgh Supercomputing Center]","institution_ids":["https://openalex.org/I35765314"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100451619","display_name":"Zhihui Zhang","orcid":"https://orcid.org/0000-0002-5189-4150"},"institutions":[{"id":"https://openalex.org/I35765314","display_name":"Pittsburgh Supercomputing Center","ror":"https://ror.org/04tac1482","country_code":"US","type":"facility","lineage":["https://openalex.org/I35765314"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhihui Zhang","raw_affiliation_strings":["Pittsburgh Supercomputing Center","[Pittsburgh Supercomputing Center]"],"affiliations":[{"raw_affiliation_string":"Pittsburgh Supercomputing Center","institution_ids":["https://openalex.org/I35765314"]},{"raw_affiliation_string":"[Pittsburgh Supercomputing Center]","institution_ids":["https://openalex.org/I35765314"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006560080","display_name":"Josephine Palencia","orcid":null},"institutions":[{"id":"https://openalex.org/I35765314","display_name":"Pittsburgh Supercomputing Center","ror":"https://ror.org/04tac1482","country_code":"US","type":"facility","lineage":["https://openalex.org/I35765314"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Josephine Palencia","raw_affiliation_strings":["Pittsburgh Supercomputing Center","[Pittsburgh Supercomputing Center]"],"affiliations":[{"raw_affiliation_string":"Pittsburgh Supercomputing Center","institution_ids":["https://openalex.org/I35765314"]},{"raw_affiliation_string":"[Pittsburgh Supercomputing Center]","institution_ids":["https://openalex.org/I35765314"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030401879","display_name":"S. Sanielevici","orcid":"https://orcid.org/0000-0002-3171-8563"},"institutions":[{"id":"https://openalex.org/I35765314","display_name":"Pittsburgh Supercomputing Center","ror":"https://ror.org/04tac1482","country_code":"US","type":"facility","lineage":["https://openalex.org/I35765314"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sergiu Sanielevici","raw_affiliation_strings":["Pittsburgh Supercomputing Center","[Pittsburgh Supercomputing Center]"],"affiliations":[{"raw_affiliation_string":"Pittsburgh Supercomputing Center","institution_ids":["https://openalex.org/I35765314"]},{"raw_affiliation_string":"[Pittsburgh Supercomputing Center]","institution_ids":["https://openalex.org/I35765314"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025575070","display_name":"Jared Yanovich","orcid":null},"institutions":[{"id":"https://openalex.org/I35765314","display_name":"Pittsburgh Supercomputing Center","ror":"https://ror.org/04tac1482","country_code":"US","type":"facility","lineage":["https://openalex.org/I35765314"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jared Yanovich","raw_affiliation_strings":["Pittsburgh Supercomputing Center","[Pittsburgh Supercomputing Center]"],"affiliations":[{"raw_affiliation_string":"Pittsburgh Supercomputing Center","institution_ids":["https://openalex.org/I35765314"]},{"raw_affiliation_string":"[Pittsburgh Supercomputing Center]","institution_ids":["https://openalex.org/I35765314"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013316574","display_name":"Robert Budden","orcid":null},"institutions":[{"id":"https://openalex.org/I35765314","display_name":"Pittsburgh Supercomputing Center","ror":"https://ror.org/04tac1482","country_code":"US","type":"facility","lineage":["https://openalex.org/I35765314"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Budden","raw_affiliation_strings":["Pittsburgh Supercomputing Center","[Pittsburgh Supercomputing Center]"],"affiliations":[{"raw_affiliation_string":"Pittsburgh Supercomputing Center","institution_ids":["https://openalex.org/I35765314"]},{"raw_affiliation_string":"[Pittsburgh Supercomputing Center]","institution_ids":["https://openalex.org/I35765314"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5025611053"],"corresponding_institution_ids":["https://openalex.org/I150468666"],"apc_list":null,"apc_paid":null,"fwci":0.775,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.82606415,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9835000038146973,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gateway","display_name":"Gateway (web page)","score":0.6931208968162537},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6519277095794678},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.6412431001663208},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5144443511962891},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4878287613391876},{"id":"https://openalex.org/keywords/point","display_name":"Point (geometry)","score":0.47675642371177673},{"id":"https://openalex.org/keywords/galaxy","display_name":"Galaxy","score":0.4343905448913574},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2998616695404053},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.09670931100845337}],"concepts":[{"id":"https://openalex.org/C2777710495","wikidata":"https://www.wikidata.org/wiki/Q5527195","display_name":"Gateway (web page)","level":2,"score":0.6931208968162537},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6519277095794678},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.6412431001663208},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5144443511962891},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4878287613391876},{"id":"https://openalex.org/C28719098","wikidata":"https://www.wikidata.org/wiki/Q44946","display_name":"Point (geometry)","level":2,"score":0.47675642371177673},{"id":"https://openalex.org/C98444146","wikidata":"https://www.wikidata.org/wiki/Q318","display_name":"Galaxy","level":2,"score":0.4343905448913574},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2998616695404053},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.09670931100845337},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2484762.2484817","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2484762.2484817","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6299999952316284,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W1968659469","https://openalex.org/W2090420997","https://openalex.org/W2136482257"],"related_works":["https://openalex.org/W2092530219","https://openalex.org/W2388464034","https://openalex.org/W2533125852","https://openalex.org/W3123141149","https://openalex.org/W2140460949","https://openalex.org/W2105580438","https://openalex.org/W2751414885","https://openalex.org/W2369391311","https://openalex.org/W2057435755","https://openalex.org/W2910762661"],"abstract_inverted_index":{"We":[0],"have":[1,52,94],"developed":[2],"and":[3,38,80,110,125],"continue":[4],"to":[5,24,65],"support":[6],"the":[7,42,56,104,135],"Galaxy":[8,16,46],"genomic":[9],"analysis":[10,17,32,108,136],"system":[11],"[1].":[12],"Our":[13,48],"main":[14],"public":[15,117],"website":[18],"(Galaxy":[19],"Main)":[20],"currently":[21],"supports":[22],"close":[23],"30,000":[25],"users":[26],"performing":[27],"hundreds":[28],"of":[29,31,58,77,89,107,137],"thousands":[30],"jobs":[33],"every":[34],"month.":[35],"Many":[36],"academic":[37],"commercial":[39],"institutions":[40],"around":[41],"world":[43],"operate":[44],"private":[45],"instances.":[47],"efforts":[49,124],"so":[50],"far":[51],"been":[53],"focused":[54],"on":[55,115],"development":[57],"software":[59],"that":[60],"enables":[61],"any":[62],"biological":[63,112,138],"researcher":[64],"perform":[66],"complex":[67],"computational":[68],"analyses":[69],"by":[70],"hiding":[71],"technical":[72],"complexities":[73],"associated":[74,111],"with":[75],"management":[76],"underlying":[78],"programs":[79],"high-performance":[81],"compute":[82],"infrastructure":[83],"[2].":[84],"As":[85],"a":[86,96,130],"direct":[87],"consequence":[88],"our":[90,116,122],"initial":[91],"success":[92],"we":[93,99,120],"reached":[95],"point":[97],"where":[98],"can":[100],"no":[101],"longer":[102],"sustain":[103],"exponential":[105],"growth":[106],"load":[109],"data":[113],"storage":[114],"servers.":[118],"Here":[119],"discuss":[121],"ongoing":[123],"future":[126],"plans":[127],"for":[128,134],"establishing":[129],"sustainable":[131],"national":[132],"gateway":[133],"data.":[139]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
