{"id":"https://openalex.org/W2047103656","doi":"https://doi.org/10.1145/2480362.2480610","title":"A conceptual approach to gene expression analysis enhanced by visual analytics","display_name":"A conceptual approach to gene expression analysis enhanced by visual analytics","publication_year":2013,"publication_date":"2013-03-18","ids":{"openalex":"https://openalex.org/W2047103656","doi":"https://doi.org/10.1145/2480362.2480610","mag":"2047103656"},"language":"en","primary_location":{"id":"doi:10.1145/2480362.2480610","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2480362.2480610","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 28th Annual ACM Symposium on Applied Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103567520","display_name":"Cassio Melo","orcid":null},"institutions":[{"id":"https://openalex.org/I216852786","display_name":"\u00c9cole Centrale Paris","ror":"https://ror.org/00v0y5771","country_code":"FR","type":"education","lineage":["https://openalex.org/I216852786"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Cassio Melo","raw_affiliation_strings":["\u00c9cole Centrale Paris, Ch\u00e2tenay-Malabry, France"],"affiliations":[{"raw_affiliation_string":"\u00c9cole Centrale Paris, Ch\u00e2tenay-Malabry, France","institution_ids":["https://openalex.org/I216852786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105833326","display_name":"Marie-Aude Aufaure","orcid":null},"institutions":[{"id":"https://openalex.org/I216852786","display_name":"\u00c9cole Centrale Paris","ror":"https://ror.org/00v0y5771","country_code":"FR","type":"education","lineage":["https://openalex.org/I216852786"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marie-Aude Aufaure","raw_affiliation_strings":["\u00c9cole Centrale Paris, Ch\u00e2tenay-Malabry, France"],"affiliations":[{"raw_affiliation_string":"\u00c9cole Centrale Paris, Ch\u00e2tenay-Malabry, France","institution_ids":["https://openalex.org/I216852786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045223505","display_name":"Constantinos Orphanides","orcid":null},"institutions":[{"id":"https://openalex.org/I71422933","display_name":"Sheffield Hallam University","ror":"https://ror.org/019wt1929","country_code":"GB","type":"education","lineage":["https://openalex.org/I71422933"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Constantinos Orphanides","raw_affiliation_strings":["Sheffield Hallam University, Sheffield, United Kingdom","Sheffield Hallam University , Sheffield , United Kingdom"],"affiliations":[{"raw_affiliation_string":"Sheffield Hallam University, Sheffield, United Kingdom","institution_ids":["https://openalex.org/I71422933"]},{"raw_affiliation_string":"Sheffield Hallam University , Sheffield , United Kingdom","institution_ids":["https://openalex.org/I71422933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090158188","display_name":"Simon Andrews","orcid":"https://orcid.org/0000-0003-2094-7456"},"institutions":[{"id":"https://openalex.org/I71422933","display_name":"Sheffield Hallam University","ror":"https://ror.org/019wt1929","country_code":"GB","type":"education","lineage":["https://openalex.org/I71422933"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Simon Andrews","raw_affiliation_strings":["Sheffield Hallam University, Sheffield, United Kingdom","Sheffield Hallam University , Sheffield , United Kingdom"],"affiliations":[{"raw_affiliation_string":"Sheffield Hallam University, Sheffield, United Kingdom","institution_ids":["https://openalex.org/I71422933"]},{"raw_affiliation_string":"Sheffield Hallam University , Sheffield , United Kingdom","institution_ids":["https://openalex.org/I71422933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032536651","display_name":"Kenneth McLeod","orcid":"https://orcid.org/0000-0002-2006-6619"},"institutions":[{"id":"https://openalex.org/I4210085930","display_name":"Heriot-Watt University Malaysia","ror":"https://ror.org/0059w0420","country_code":"MY","type":"education","lineage":["https://openalex.org/I4210085930"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Kenneth McLeod","raw_affiliation_strings":["Heriot-Watt University, Edinburgh, Scotland"],"affiliations":[{"raw_affiliation_string":"Heriot-Watt University, Edinburgh, Scotland","institution_ids":["https://openalex.org/I4210085930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079735260","display_name":"Albert Burger","orcid":"https://orcid.org/0000-0002-5492-8635"},"institutions":[{"id":"https://openalex.org/I4210085930","display_name":"Heriot-Watt University Malaysia","ror":"https://ror.org/0059w0420","country_code":"MY","type":"education","lineage":["https://openalex.org/I4210085930"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Albert Burger","raw_affiliation_strings":["Heriot-Watt University, Edinburgh, Scotland"],"affiliations":[{"raw_affiliation_string":"Heriot-Watt University, Edinburgh, Scotland","institution_ids":["https://openalex.org/I4210085930"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5103567520"],"corresponding_institution_ids":["https://openalex.org/I216852786"],"apc_list":null,"apc_paid":null,"fwci":2.9588,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.90913693,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"1314","last_page":"1319"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11063","display_name":"Rough Sets and Fuzzy Logic","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11063","display_name":"Rough Sets and Fuzzy Logic","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11106","display_name":"Data Management and Algorithms","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1711","display_name":"Signal Processing"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7614231109619141},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7471948266029358},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5118522047996521},{"id":"https://openalex.org/keywords/visual-analytics","display_name":"Visual analytics","score":0.5069904327392578},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.47889581322669983},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4650847315788269},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.439857542514801},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.42978599667549133},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3361644148826599},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.3173787593841553},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.24783360958099365},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.18867263197898865},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.16103246808052063}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7614231109619141},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7471948266029358},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5118522047996521},{"id":"https://openalex.org/C59732488","wikidata":"https://www.wikidata.org/wiki/Q2528440","display_name":"Visual analytics","level":3,"score":0.5069904327392578},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.47889581322669983},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4650847315788269},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.439857542514801},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.42978599667549133},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3361644148826599},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.3173787593841553},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.24783360958099365},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.18867263197898865},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16103246808052063},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/2480362.2480610","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2480362.2480610","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 28th Annual ACM Symposium on Applied Computing","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.376.2594","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.376.2594","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://shura.shu.ac.uk/7158/1/Andrews_conceptual_approach.pdf","raw_type":"text"},{"id":"pmh:oai:shura.shu.ac.uk:7158","is_oa":false,"landing_page_url":"http://orcid.org/0000-0003-2094-7456>","pdf_url":null,"source":{"id":"https://openalex.org/S4306401600","display_name":"SHURA (Sheffield Hallam University Research Archive) (Sheffield Hallam University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71422933","host_organization_name":"Sheffield Hallam University","host_organization_lineage":["https://openalex.org/I71422933"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7270452340","display_name":null,"funder_award_id":"FP7-ICT-2010-257403","funder_id":"https://openalex.org/F4320334960","funder_display_name":"Seventh Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320334960","display_name":"Seventh Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1532476473","https://openalex.org/W1593205966","https://openalex.org/W1814508501","https://openalex.org/W1880582057","https://openalex.org/W1947406465","https://openalex.org/W2010279825","https://openalex.org/W2051508823","https://openalex.org/W2097481508","https://openalex.org/W2105883975","https://openalex.org/W2131474641","https://openalex.org/W2147823962","https://openalex.org/W2152307491","https://openalex.org/W2169049983","https://openalex.org/W2171612826","https://openalex.org/W2406998696","https://openalex.org/W2407643477","https://openalex.org/W2739466832","https://openalex.org/W4298379186","https://openalex.org/W6645062823","https://openalex.org/W7048212983"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2362367986","https://openalex.org/W348707231","https://openalex.org/W4367333290","https://openalex.org/W2019038080","https://openalex.org/W3041760129","https://openalex.org/W2062940763","https://openalex.org/W2186032312"],"abstract_inverted_index":{"The":[0,73],"analysis":[1,51],"of":[2,17,22,52],"gene":[3,53],"expression":[4,54],"data":[5,55],"is":[6,99],"a":[7,69,78,86,102],"complex":[8],"task":[9],"for":[10],"biologists":[11],"wishing":[12],"to":[13,33,49,93],"understand":[14],"the":[15,20,50,83],"role":[16],"genes":[18],"in":[19,68],"formation":[21],"diseases":[23],"such":[24],"as":[25,101],"cancer.":[26],"Biologists":[27],"need":[28],"greater":[29],"support":[30],"when":[31],"trying":[32],"discover,":[34],"and":[35,65,81,105],"comprehend,":[36],"new":[37],"relationships":[38],"within":[39],"their":[40],"data.":[41],"In":[42],"this":[43],"paper,":[44],"we":[45],"describe":[46],"an":[47],"approach":[48],"where":[56],"overlapping":[57],"groupings":[58],"are":[59],"generated":[60],"by":[61],"Formal":[62],"Concept":[63],"Analysis":[64],"interactively":[66],"analyzed":[67],"tool":[70],"called":[71],"CUBIST.":[72],"CUBIST":[74],"workflow":[75],"involves":[76],"querying":[77],"semantic":[79],"database":[80],"converting":[82],"result":[84],"into":[85],"formal":[87],"context,":[88],"which":[89],"can":[90],"be":[91],"simplified":[92],"make":[94],"it":[95,98],"manageable,":[96],"before":[97],"visualized":[100],"concept":[103],"lattice":[104],"associated":[106],"charts.":[107]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
