{"id":"https://openalex.org/W2121383574","doi":"https://doi.org/10.1145/2435264.2435313","title":"Genome sequencing using mapreduce on FPGA with multiple hardware accelerators (abstract only)","display_name":"Genome sequencing using mapreduce on FPGA with multiple hardware accelerators (abstract only)","publication_year":2013,"publication_date":"2013-02-11","ids":{"openalex":"https://openalex.org/W2121383574","doi":"https://doi.org/10.1145/2435264.2435313","mag":"2121383574"},"language":"en","primary_location":{"id":"doi:10.1145/2435264.2435313","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2435264.2435313","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM/SIGDA international symposium on Field programmable gate arrays","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011884768","display_name":"Chao Wang","orcid":"https://orcid.org/0000-0002-9403-5575"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chao Wang","raw_affiliation_strings":["University of Science and Technology of China, Suzhou, China"],"affiliations":[{"raw_affiliation_string":"University of Science and Technology of China, Suzhou, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100407749","display_name":"Xi Li","orcid":"https://orcid.org/0009-0003-7871-5401"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xi Li","raw_affiliation_strings":["University of Science and Technology of China, Hefei, China",", University of Science and Technology of China, Hefei, China#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":", University of Science and Technology of China, Hefei, China#TAB#","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077322091","display_name":"Xuehai Zhou","orcid":"https://orcid.org/0000-0002-8360-3143"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuehai Zhou","raw_affiliation_strings":["University of Science and Technology of China, Hefei, China",", University of Science and Technology of China, Hefei, China#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":", University of Science and Technology of China, Hefei, China#TAB#","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103384472","display_name":"Jim Martin","orcid":null},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jim Martin","raw_affiliation_strings":["Clemson University, Clemson, SC, USA","Clemson University, Clemson, SC, USA,"],"affiliations":[{"raw_affiliation_string":"Clemson University, Clemson, SC, USA","institution_ids":["https://openalex.org/I8078737"]},{"raw_affiliation_string":"Clemson University, Clemson, SC, USA,","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077847474","display_name":"Ray C. C. Cheung","orcid":"https://orcid.org/0000-0002-6764-0729"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Ray C.C. Cheung","raw_affiliation_strings":["City University of Hong Kong, Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"City University of Hong Kong, Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I168719708"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5011884768"],"corresponding_institution_ids":["https://openalex.org/I126520041"],"apc_list":null,"apc_paid":null,"fwci":0.2924,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.62046551,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"266","last_page":"266"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9587000012397766,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8008634448051453},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.711524248123169},{"id":"https://openalex.org/keywords/hardware-acceleration","display_name":"Hardware acceleration","score":0.6716611385345459},{"id":"https://openalex.org/keywords/field-programmable-gate-array","display_name":"Field-programmable gate array","score":0.6582357883453369},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.5702478885650635},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5500286817550659},{"id":"https://openalex.org/keywords/acceleration","display_name":"Acceleration","score":0.48318591713905334},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.47682255506515503},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.4371708333492279},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4331996738910675},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.429703027009964},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.21514776349067688},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1490815281867981},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10871908068656921}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8008634448051453},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.711524248123169},{"id":"https://openalex.org/C13164978","wikidata":"https://www.wikidata.org/wiki/Q600158","display_name":"Hardware acceleration","level":3,"score":0.6716611385345459},{"id":"https://openalex.org/C42935608","wikidata":"https://www.wikidata.org/wiki/Q190411","display_name":"Field-programmable gate array","level":2,"score":0.6582357883453369},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.5702478885650635},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5500286817550659},{"id":"https://openalex.org/C117896860","wikidata":"https://www.wikidata.org/wiki/Q11376","display_name":"Acceleration","level":2,"score":0.48318591713905334},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.47682255506515503},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.4371708333492279},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4331996738910675},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.429703027009964},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.21514776349067688},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1490815281867981},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10871908068656921},{"id":"https://openalex.org/C74650414","wikidata":"https://www.wikidata.org/wiki/Q11397","display_name":"Classical mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2435264.2435313","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2435264.2435313","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM/SIGDA international symposium on Field programmable gate arrays","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5699999928474426}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2058965144","https://openalex.org/W2164382479","https://openalex.org/W2146343568","https://openalex.org/W98480971","https://openalex.org/W2150291671","https://openalex.org/W2013643406","https://openalex.org/W2532502681","https://openalex.org/W2146872326","https://openalex.org/W2518118925","https://openalex.org/W3159273459"],"abstract_inverted_index":{"The":[0,85,127],"genome":[1],"sequencing":[2],"problem":[3],"with":[4,11,36,77],"short":[5,55,101,167],"reads":[6,103,168],"is":[7,64,111,130,147],"an":[8],"emerging":[9],"field":[10],"seemingly":[12],"limitless":[13],"possibilities":[14],"for":[15,45,54,121,164],"advances":[16],"in":[17],"numerous":[18],"scientific":[19],"research":[20],"and":[21,40,90,118],"application":[22],"domains.":[23],"It":[24],"has":[25,155],"been":[26],"the":[27,31,37,41,51,97,115,123,133,160],"hot":[28],"topic":[29],"during":[30],"past":[32],"few":[33],"years.":[34],"Growing":[35],"data":[38],"population":[39],"ease":[42],"to":[43,49,104,158],"access":[44],"personal":[46],"users,":[47],"how":[48],"shorten":[50],"response":[52],"interval":[53],"read":[56],"mapping":[57],"at":[58],"a":[59,72,105,143],"large":[60,165],"scale":[61,166],"computing":[62],"domain":[63],"extremely":[65],"important.":[66],"In":[67],"this":[68],"paper":[69],"we":[70],"propose":[71],"novel":[73],"FPGA-based":[74],"acceleration":[75,83],"solution":[76],"Map-Reduce":[78,91],"framework":[79],"on":[80,113,142],"multiple":[81],"hardware":[82,88],"engines.":[84],"combination":[86],"of":[87,99],"accelerators":[89],"execution":[92],"flow":[93],"could":[94],"greatly":[95],"expedite":[96],"task":[98],"aligning":[100,122],"length":[102],"known":[106],"reference":[107,116],"genome.":[108],"Our":[109],"approach":[110],"based":[112],"preprocessing":[114],"genomes":[117],"iterative":[119],"jobs":[120],"continuous":[124],"incoming":[125],"reads.":[126],"read-mapping":[128],"algorithm":[129],"modeled":[131],"after":[132],"creditable":[134],"RMAP":[135],"software":[136],"approach.":[137],"Furthermore,":[138],"theoretical":[139],"speedup":[140],"analysis":[141],"MapReduce":[144],"programming":[145],"platform":[146],"presented,":[148],"which":[149],"demonstrates":[150],"that":[151],"our":[152],"proposed":[153],"architecture":[154],"efficient":[156],"potential":[157],"reduce":[159],"average":[161],"waiting":[162],"time":[163],"applications.":[169]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
