{"id":"https://openalex.org/W2079958696","doi":"https://doi.org/10.1145/2429069.2429125","title":"Synthesis of biological models from mutation experiments","display_name":"Synthesis of biological models from mutation experiments","publication_year":2013,"publication_date":"2013-01-22","ids":{"openalex":"https://openalex.org/W2079958696","doi":"https://doi.org/10.1145/2429069.2429125","mag":"2079958696"},"language":"en","primary_location":{"id":"doi:10.1145/2429069.2429125","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2429069.2429125","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 40th annual ACM SIGPLAN-SIGACT symposium on Principles of programming languages","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052241153","display_name":"Ali Sinan K\u00f6ksal","orcid":null},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ali Sinan Koksal","raw_affiliation_strings":["University of California, Berkeley, Berkeley, CA, USA","University of California, Berkeley, Berkeley, CA USA"],"affiliations":[{"raw_affiliation_string":"University of California, Berkeley, Berkeley, CA, USA","institution_ids":["https://openalex.org/I95457486"]},{"raw_affiliation_string":"University of California, Berkeley, Berkeley, CA USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052178488","display_name":"Yewen Pu","orcid":"https://orcid.org/0009-0000-4190-0636"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yewen Pu","raw_affiliation_strings":["University of California, Berkeley, Berkeley, CA, USA","University of California, Berkeley, Berkeley, CA USA"],"affiliations":[{"raw_affiliation_string":"University of California, Berkeley, Berkeley, CA, USA","institution_ids":["https://openalex.org/I95457486"]},{"raw_affiliation_string":"University of California, Berkeley, Berkeley, CA USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102786175","display_name":"Saurabh Srivastava","orcid":"https://orcid.org/0000-0002-3032-5557"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Saurabh Srivastava","raw_affiliation_strings":["University of California, Berkeley, Berkeley, CA, USA","University of California, Berkeley, Berkeley, CA USA"],"affiliations":[{"raw_affiliation_string":"University of California, Berkeley, Berkeley, CA, USA","institution_ids":["https://openalex.org/I95457486"]},{"raw_affiliation_string":"University of California, Berkeley, Berkeley, CA USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085160432","display_name":"Rastislav Bod\u00edk","orcid":"https://orcid.org/0000-0001-6639-1647"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rastislav Bodik","raw_affiliation_strings":["University of California, Berkeley, Berkeley, CA, USA","University of California, Berkeley, Berkeley, CA USA"],"affiliations":[{"raw_affiliation_string":"University of California, Berkeley, Berkeley, CA, USA","institution_ids":["https://openalex.org/I95457486"]},{"raw_affiliation_string":"University of California, Berkeley, Berkeley, CA USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066189305","display_name":"Jasmin Fisher","orcid":"https://orcid.org/0000-0003-4477-9047"},"institutions":[{"id":"https://openalex.org/I4210164937","display_name":"Microsoft Research (United Kingdom)","ror":"https://ror.org/05k87vq12","country_code":"GB","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4210164937"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jasmin Fisher","raw_affiliation_strings":["Microsoft Research, Cambridge, Cambridge, England UK"],"affiliations":[{"raw_affiliation_string":"Microsoft Research, Cambridge, Cambridge, England UK","institution_ids":["https://openalex.org/I4210164937"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045161607","display_name":"Nir Piterman","orcid":"https://orcid.org/0000-0002-8242-5357"},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nir Piterman","raw_affiliation_strings":["University of Leicester, Leicester, England UK","University of Leicester, Leicester, England UK#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Leicester, Leicester, England UK","institution_ids":["https://openalex.org/I153648349"]},{"raw_affiliation_string":"University of Leicester, Leicester, England UK#TAB#","institution_ids":["https://openalex.org/I153648349"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5052241153"],"corresponding_institution_ids":["https://openalex.org/I95457486"],"apc_list":null,"apc_paid":null,"fwci":3.2168,"has_fulltext":false,"cited_by_count":37,"citation_normalized_percentile":{"value":0.92481375,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"469","last_page":"482"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.902384877204895},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7127805352210999},{"id":"https://openalex.org/keywords/face","display_name":"Face (sociological concept)","score":0.526936411857605},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.45756393671035767},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.41954344511032104},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4189659655094147},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.41699743270874023},{"id":"https://openalex.org/keywords/model-checking","display_name":"Model checking","score":0.41668421030044556},{"id":"https://openalex.org/keywords/formal-verification","display_name":"Formal verification","score":0.4105224907398224},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3262701630592346},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15475189685821533},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07344067096710205}],"concepts":[{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.902384877204895},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7127805352210999},{"id":"https://openalex.org/C2779304628","wikidata":"https://www.wikidata.org/wiki/Q3503480","display_name":"Face (sociological concept)","level":2,"score":0.526936411857605},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.45756393671035767},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.41954344511032104},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4189659655094147},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.41699743270874023},{"id":"https://openalex.org/C110251889","wikidata":"https://www.wikidata.org/wiki/Q1569697","display_name":"Model checking","level":2,"score":0.41668421030044556},{"id":"https://openalex.org/C111498074","wikidata":"https://www.wikidata.org/wiki/Q173326","display_name":"Formal verification","level":2,"score":0.4105224907398224},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3262701630592346},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15475189685821533},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07344067096710205},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2429069.2429125","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2429069.2429125","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 40th annual ACM SIGPLAN-SIGACT symposium on Principles of programming languages","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W205696660","https://openalex.org/W1480909796","https://openalex.org/W1487906584","https://openalex.org/W1490290163","https://openalex.org/W1532361198","https://openalex.org/W1549774509","https://openalex.org/W1586735752","https://openalex.org/W1944506262","https://openalex.org/W1946177469","https://openalex.org/W1974514467","https://openalex.org/W1978319180","https://openalex.org/W1986397618","https://openalex.org/W1987179641","https://openalex.org/W2003871372","https://openalex.org/W2011059230","https://openalex.org/W2011835017","https://openalex.org/W2014566660","https://openalex.org/W2034717053","https://openalex.org/W2035991642","https://openalex.org/W2046997608","https://openalex.org/W2101432564","https://openalex.org/W2105161851","https://openalex.org/W2118039525","https://openalex.org/W2121523192","https://openalex.org/W2132525863","https://openalex.org/W2135648313","https://openalex.org/W2145401523","https://openalex.org/W2147760702","https://openalex.org/W2149236697","https://openalex.org/W2912904668","https://openalex.org/W3010792303","https://openalex.org/W4237412827"],"related_works":["https://openalex.org/W2350278424","https://openalex.org/W2360304673","https://openalex.org/W2037121848","https://openalex.org/W4312733571","https://openalex.org/W2006962382","https://openalex.org/W2149716943","https://openalex.org/W4315606162","https://openalex.org/W2340807904","https://openalex.org/W1547517160","https://openalex.org/W1483297389"],"abstract_inverted_index":{"Executable":[0],"biology":[1],"presents":[2],"new":[3],"challenges":[4],"to":[5],"formal":[6],"methods.":[7],"This":[8],"paper":[9],"addresses":[10],"two":[11],"problems":[12],"that":[13],"cell":[14],"biologists":[15],"face":[16],"when":[17],"developing":[18],"formally":[19],"analyzable":[20],"models.":[21]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":7}],"updated_date":"2025-11-25T21:42:39.735039","created_date":"2025-10-10T00:00:00"}
