{"id":"https://openalex.org/W2084011432","doi":"https://doi.org/10.1145/2422436.2422476","title":"Active self-assembly of algorithmic shapes and patterns in polylogarithmic time","display_name":"Active self-assembly of algorithmic shapes and patterns in polylogarithmic time","publication_year":2013,"publication_date":"2013-01-03","ids":{"openalex":"https://openalex.org/W2084011432","doi":"https://doi.org/10.1145/2422436.2422476","mag":"2084011432"},"language":"en","primary_location":{"id":"doi:10.1145/2422436.2422476","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2422436.2422476","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 4th conference on Innovations in Theoretical Computer Science","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029275026","display_name":"Damien Woods","orcid":"https://orcid.org/0000-0002-0638-2690"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Damien Woods","raw_affiliation_strings":["California Institute of Technology, Pasadena, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087513049","display_name":"Ho-Lin Chen","orcid":"https://orcid.org/0000-0002-6171-9962"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ho-Lin Chen","raw_affiliation_strings":["California Institute of Technology, Pasadena, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011938766","display_name":"Scott Goodfriend","orcid":null},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott Goodfriend","raw_affiliation_strings":["California Institute of Technology, Pasadena, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042148678","display_name":"Nadine Dabby","orcid":null},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nadine Dabby","raw_affiliation_strings":["California Institute of Technology, Pasadena, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000956443","display_name":"Erik Winfree","orcid":"https://orcid.org/0000-0002-5899-7523"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Erik Winfree","raw_affiliation_strings":["California Institute of Technology, Pasadena, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059621249","display_name":"Peng Yin","orcid":"https://orcid.org/0000-0002-2769-6357"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peng Yin","raw_affiliation_strings":["California Institute of Technology, Pasadena, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I122411786"],"apc_list":null,"apc_paid":null,"fwci":30.9824,"has_fulltext":false,"cited_by_count":118,"citation_normalized_percentile":{"value":0.99944793,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":null,"issue":null,"first_page":"353","last_page":"354"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12784","display_name":"Modular Robots and Swarm Intelligence","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2210","display_name":"Mechanical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12784","display_name":"Modular Robots and Swarm Intelligence","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2210","display_name":"Mechanical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/turing","display_name":"Turing","score":0.6316262483596802},{"id":"https://openalex.org/keywords/logarithm","display_name":"Logarithm","score":0.577155590057373},{"id":"https://openalex.org/keywords/time-complexity","display_name":"Time complexity","score":0.5530715584754944},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5039326548576355},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4610999524593353},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.44760435819625854},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3662414848804474},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.31659743189811707},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.242311030626297},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09547066688537598}],"concepts":[{"id":"https://openalex.org/C9870796","wikidata":"https://www.wikidata.org/wiki/Q490481","display_name":"Turing","level":2,"score":0.6316262483596802},{"id":"https://openalex.org/C39927690","wikidata":"https://www.wikidata.org/wiki/Q11197","display_name":"Logarithm","level":2,"score":0.577155590057373},{"id":"https://openalex.org/C311688","wikidata":"https://www.wikidata.org/wiki/Q2393193","display_name":"Time complexity","level":2,"score":0.5530715584754944},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5039326548576355},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4610999524593353},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.44760435819625854},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3662414848804474},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.31659743189811707},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.242311030626297},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09547066688537598},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1145/2422436.2422476","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2422436.2422476","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 4th conference on Innovations in Theoretical Computer Science","raw_type":"proceedings-article"},{"id":"pmh:oai:mural.maynoothuniversity.ie:15721","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401432","display_name":"Maynooth University ePrints and eTheses Archive (Maynooth University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157286207","host_organization_name":"National University of Ireland, Maynooth","host_organization_lineage":["https://openalex.org/I157286207"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:authors.library.caltech.edu:36616","is_oa":false,"landing_page_url":"https://authors.library.caltech.edu/36616/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Book Section"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.299.4299","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.299.4299","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://dna.caltech.edu/Papers/nubotsITCS2013.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.765.6631","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.765.6631","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arxiv.org/pdf/1301.2626.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W1567090568","https://openalex.org/W1600526016","https://openalex.org/W1981863124","https://openalex.org/W2008591003","https://openalex.org/W2010769244","https://openalex.org/W2126961173"],"related_works":["https://openalex.org/W1585007175","https://openalex.org/W2382521049","https://openalex.org/W2144385241","https://openalex.org/W4253593777","https://openalex.org/W2951497643","https://openalex.org/W3101625811","https://openalex.org/W2165950148","https://openalex.org/W4300101996","https://openalex.org/W2338854850","https://openalex.org/W2184239527"],"abstract_inverted_index":{"We":[0,168],"describe":[1],"a":[2,78,105,154,161],"computational":[3],"model":[4,17,29],"for":[5],"studying":[6],"the":[7,60,63,142,145,149,166,173,186,190,198],"complexity":[8,188],"of":[9,20,62,107,113,144,175,189,202],"self-assembled":[10],"structures":[11],"with":[12,42,216],"active":[13,83,203,217],"molecular":[14,48,218],"components.":[15,219],"Our":[16,123],"captures":[18],"notions":[19],"growth":[21],"and":[22,45,55,93,111,135,208],"movement":[23],"ubiquitous":[24],"in":[25,109,120,137,141,165,179],"biological":[26],"systems.":[27],"The":[28],"is":[30,117,164],"inspired":[31],"by":[32,185],"biology's":[33],"fantastic":[34],"ability":[35],"to":[36,67,89,103,128,152,212],"assemble":[37],"biomolecules":[38],"that":[39,50,57,116],"form":[40],"systems":[41,215],"complicated":[43,73],"structure":[44,61],"dynamics,":[46],"from":[47,77,95],"motors":[49],"walk":[51],"on":[52],"rigid":[53],"tracks":[54],"proteins":[56],"dynamically":[58],"alter":[59],"cell":[64],"during":[65],"mitosis,":[66],"embryonic":[68],"development":[69],"where":[70],"large":[71],"scale":[72],"organisms":[74],"efficiently":[75,90],"grow":[76,104,129],"single":[79],"cell.":[80],"Using":[81],"this":[82,170],"self-assembly":[84,204,207,214],"model,":[85],"we":[86,100],"show":[87,101,126],"how":[88,102,127],"self-assemble":[91],"shapes":[92,134],"patterns":[94,136],"simple":[96],"monomers.":[97],"For":[98],"example":[99],"line":[106],"monomers":[108,183],"time":[110,139,150],"number":[112,174],"monomer":[114,176],"states":[115],"merely":[118],"logarithmic":[119,178],"its":[121],"length.":[122],"main":[124],"results":[125],"arbitrary":[130],"connected":[131],"two-dimensional":[132],"geometric":[133],"expected":[138],"polylogarithmic":[140],"size":[143],"shape":[146,180,191],"plus":[147,182],"roughly":[148],"required":[151,184],"run":[153],"Turing":[155],"machine":[156],"deciding":[157],"whether":[158],"or":[159,192],"not":[160],"given":[162],"pixel":[163],"shape.":[167],"do":[169],"while":[171],"keeping":[172],"types":[177],"size,":[181],"Kolmogorov":[187],"pattern.":[193],"This":[194],"work":[195],"thus":[196],"highlights":[197],"fundamental":[199],"efficiency":[200],"advantage":[201],"over":[205],"passive":[206],"motivates":[209],"experimental":[210],"effort":[211],"construct":[213]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":15},{"year":2013,"cited_by_count":8}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
