{"id":"https://openalex.org/W1991079432","doi":"https://doi.org/10.1145/2390068.2390079","title":"Protein complex prediction via bottleneck-based graph partitioning","display_name":"Protein complex prediction via bottleneck-based graph partitioning","publication_year":2012,"publication_date":"2012-10-29","ids":{"openalex":"https://openalex.org/W1991079432","doi":"https://doi.org/10.1145/2390068.2390079","mag":"1991079432"},"language":"en","primary_location":{"id":"doi:10.1145/2390068.2390079","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2390068.2390079","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM sixth international workshop on Data and text mining in biomedical informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027608625","display_name":"Jaegyoon Ahn","orcid":"https://orcid.org/0000-0002-7020-7002"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Jaegyoon Ahn","raw_affiliation_strings":["Yonsei University, Seoul, South Korea"],"affiliations":[{"raw_affiliation_string":"Yonsei University, Seoul, South Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071472242","display_name":"Dae Hyun Lee","orcid":"https://orcid.org/0000-0001-8141-0404"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Dae Hyun Lee","raw_affiliation_strings":["Yonsei University, Seoul, South Korea"],"affiliations":[{"raw_affiliation_string":"Yonsei University, Seoul, South Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016587215","display_name":"Youngmi Yoon","orcid":"https://orcid.org/0000-0002-7420-4968"},"institutions":[{"id":"https://openalex.org/I12832649","display_name":"Gachon University","ror":"https://ror.org/03ryywt80","country_code":"KR","type":"education","lineage":["https://openalex.org/I12832649"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Youngmi Yoon","raw_affiliation_strings":["Gachon University, Seongnam-si, South Korea","[Gachon University, Seongnam-si, South Korea]"],"affiliations":[{"raw_affiliation_string":"Gachon University, Seongnam-si, South Korea","institution_ids":["https://openalex.org/I12832649"]},{"raw_affiliation_string":"[Gachon University, Seongnam-si, South Korea]","institution_ids":["https://openalex.org/I12832649"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089434512","display_name":"Yunku Yeu","orcid":"https://orcid.org/0000-0001-7544-531X"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Yunku Yeu","raw_affiliation_strings":["Yonsei University, Seoul, South Korea"],"affiliations":[{"raw_affiliation_string":"Yonsei University, Seoul, South Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100322270","display_name":"Sanghyun Park","orcid":"https://orcid.org/0000-0002-5196-6193"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sanghyun Park","raw_affiliation_strings":["Yonsei University, Seoul, South Korea"],"affiliations":[{"raw_affiliation_string":"Yonsei University, Seoul, South Korea","institution_ids":["https://openalex.org/I193775966"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5027608625"],"corresponding_institution_ids":["https://openalex.org/I193775966"],"apc_list":null,"apc_paid":null,"fwci":0.2627,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.55992519,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"49","last_page":"56"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.7593753337860107},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6554385423660278},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.46352845430374146},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.461594820022583},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.44648340344429016},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.4228783845901489},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36341962218284607},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3255976438522339},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2906135022640228},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.22249633073806763},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17106902599334717},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1470603048801422},{"id":"https://openalex.org/keywords/yeast","display_name":"Yeast","score":0.14290136098861694}],"concepts":[{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.7593753337860107},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6554385423660278},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.46352845430374146},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.461594820022583},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.44648340344429016},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.4228783845901489},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36341962218284607},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3255976438522339},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2906135022640228},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.22249633073806763},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17106902599334717},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1470603048801422},{"id":"https://openalex.org/C2779222958","wikidata":"https://www.wikidata.org/wiki/Q45422","display_name":"Yeast","level":2,"score":0.14290136098861694},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2390068.2390079","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2390068.2390079","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM sixth international workshop on Data and text mining in biomedical informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1485582261","https://openalex.org/W1513501940","https://openalex.org/W1534476081","https://openalex.org/W1783384641","https://openalex.org/W1977186059","https://openalex.org/W2030006812","https://openalex.org/W2037036397","https://openalex.org/W2093830031","https://openalex.org/W2107067224","https://openalex.org/W2110620844","https://openalex.org/W2121564430","https://openalex.org/W2130687290","https://openalex.org/W2135197754","https://openalex.org/W2136850043","https://openalex.org/W2140280811","https://openalex.org/W2148043260","https://openalex.org/W2150318080","https://openalex.org/W2163485494","https://openalex.org/W2164928285","https://openalex.org/W2165533101"],"related_works":["https://openalex.org/W2595172197","https://openalex.org/W2084856301","https://openalex.org/W2127970246","https://openalex.org/W2885125400","https://openalex.org/W1989889224","https://openalex.org/W4382618745","https://openalex.org/W1973775000","https://openalex.org/W2748922771","https://openalex.org/W1987128138","https://openalex.org/W2743976221"],"abstract_inverted_index":{"Detecting":[0],"protein":[1,21,30,48,57,83,90],"complexes":[2,22,91],"is":[3,23],"one":[4],"of":[5,20,29,69,82],"essential":[6],"and":[7,72,75],"fundamental":[8],"tasks":[9],"in":[10,88],"understanding":[11],"various":[12],"biological":[13],"functions":[14],"or":[15],"processes.":[16],"Therefore,":[17],"precise":[18,27],"identification":[19],"indispensible.":[24],"For":[25],"more":[26],"detection":[28],"complexes,":[31],"we":[32],"propose":[33],"a":[34],"novel":[35],"data":[36],"structure":[37],"which":[38,97],"employs":[39],"bottleneck":[40],"proteins":[41],"as":[42],"partitioning":[43,51],"points":[44],"for":[45],"detecting":[46],"the":[47],"complexes.":[49,58,84],"The":[50],"process":[52],"allows":[53],"overlapping":[54,89],"between":[55],"resulting":[56],"We":[59],"applied":[60],"our":[61,77],"algorithm":[62,86],"to":[63],"several":[64],"PPI":[65],"(Protein-Protein":[66],"Interaction)":[67],"networks":[68],"Saccharomyces":[70],"cerevisiae":[71],"Homo":[73],"sapiens,":[74],"validated":[76],"results":[78],"using":[79],"public":[80],"databases":[81],"Our":[85],"resulted":[87],"with":[92],"significantly":[93],"improved":[94],"F1":[95],"score,":[96],"comes":[98],"from":[99],"higher":[100],"precision.":[101]},"counts_by_year":[{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
