{"id":"https://openalex.org/W1986693694","doi":"https://doi.org/10.1145/2382936.2383061","title":"Robustness measure for an adeno-associated viral shell self-assembly is accurately predicted by configuration space atlasing using EASAL","display_name":"Robustness measure for an adeno-associated viral shell self-assembly is accurately predicted by configuration space atlasing using EASAL","publication_year":2012,"publication_date":"2012-10-07","ids":{"openalex":"https://openalex.org/W1986693694","doi":"https://doi.org/10.1145/2382936.2383061","mag":"1986693694"},"language":"en","primary_location":{"id":"doi:10.1145/2382936.2383061","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2382936.2383061","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000470629","display_name":"Ruijin Wu","orcid":"https://orcid.org/0000-0001-7309-3584"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ruijin Wu","raw_affiliation_strings":["University of Florida","[University of Florida]"],"affiliations":[{"raw_affiliation_string":"University of Florida","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"[University of Florida]","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074593301","display_name":"Aysegul Ozkan","orcid":"https://orcid.org/0000-0003-4331-3771"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aysegul Ozkan","raw_affiliation_strings":["University of Florida","[University of Florida]"],"affiliations":[{"raw_affiliation_string":"University of Florida","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"[University of Florida]","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071798456","display_name":"Antonette Bennett","orcid":"https://orcid.org/0000-0003-4986-7505"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Antonette Bennett","raw_affiliation_strings":["University of Florida","[University of Florida]"],"affiliations":[{"raw_affiliation_string":"University of Florida","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"[University of Florida]","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054521114","display_name":"Mavis Agbandje\u2010McKenna","orcid":"https://orcid.org/0000-0003-0565-5578"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mavis Agbandje-Mckenna","raw_affiliation_strings":["University of Florida","[University of Florida]"],"affiliations":[{"raw_affiliation_string":"University of Florida","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"[University of Florida]","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089647969","display_name":"Meera Sitharam","orcid":"https://orcid.org/0000-0003-1031-1403"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meera Sitharam","raw_affiliation_strings":["University of Florida","[University of Florida]"],"affiliations":[{"raw_affiliation_string":"University of Florida","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"[University of Florida]","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5000470629"],"corresponding_institution_ids":["https://openalex.org/I33213144"],"apc_list":null,"apc_paid":null,"fwci":1.1813,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.79375372,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"690","last_page":"695"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.8582192659378052},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.5567460060119629},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.5354832410812378},{"id":"https://openalex.org/keywords/shell","display_name":"Shell (structure)","score":0.45755162835121155},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4572870135307312},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.45392534136772156},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3665439188480377},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.213995099067688},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2087695598602295},{"id":"https://openalex.org/keywords/mechanical-engineering","display_name":"Mechanical engineering","score":0.12179148197174072},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.09630480408668518},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07240942120552063}],"concepts":[{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.8582192659378052},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.5567460060119629},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.5354832410812378},{"id":"https://openalex.org/C2781052500","wikidata":"https://www.wikidata.org/wiki/Q2230313","display_name":"Shell (structure)","level":2,"score":0.45755162835121155},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4572870135307312},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.45392534136772156},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3665439188480377},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.213995099067688},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2087695598602295},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.12179148197174072},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.09630480408668518},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07240942120552063},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/2382936.2383061","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2382936.2383061","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.685.2932","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.685.2932","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cise.ufl.edu/%7Esitharam/robust.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W11008052","https://openalex.org/W1503601820","https://openalex.org/W1534828991","https://openalex.org/W1594252667","https://openalex.org/W2006826594","https://openalex.org/W2009681413","https://openalex.org/W2011691446","https://openalex.org/W2013996835","https://openalex.org/W2023444347","https://openalex.org/W2027802290","https://openalex.org/W2029863180","https://openalex.org/W2030314693","https://openalex.org/W2033350048","https://openalex.org/W2035411770","https://openalex.org/W2038827564","https://openalex.org/W2043012057","https://openalex.org/W2046254858","https://openalex.org/W2048095530","https://openalex.org/W2055938504","https://openalex.org/W2058601882","https://openalex.org/W2060953134","https://openalex.org/W2064178031","https://openalex.org/W2088595675","https://openalex.org/W2115617296","https://openalex.org/W2116903488","https://openalex.org/W2128443165","https://openalex.org/W2134731229","https://openalex.org/W2137702198","https://openalex.org/W2141230915","https://openalex.org/W2149678280","https://openalex.org/W2155466708"],"related_works":["https://openalex.org/W4255837520","https://openalex.org/W2387011115","https://openalex.org/W4234808182","https://openalex.org/W2382043075","https://openalex.org/W2809151339","https://openalex.org/W2216913934","https://openalex.org/W2770593030","https://openalex.org/W2360673138","https://openalex.org/W3154990682","https://openalex.org/W2156260160"],"abstract_inverted_index":{"Viral":[0],"shell":[1],"assembly":[2,28],"occurs":[3],"spontaneously":[4],"in":[5],"solution,":[6],"caused":[7],"by":[8],"weak":[9,36],"inter-atomic":[10],"interactions":[11,37],"between":[12],"the":[13,19,27,35],"identical":[14],"coat-protein":[15],"monomers":[16],"that":[17],"constitute":[18],"shell.":[20],"A":[21],"sound":[22],"measure":[23],"of":[24,26],"robustness":[25],"process":[29],"is":[30],"therefore":[31],"based":[32],"on":[33],"determining":[34],"whose":[38],"disruption":[39],"significantly":[40],"disrupts":[41],"successful":[42],"assembly.":[43]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
