{"id":"https://openalex.org/W2001416495","doi":"https://doi.org/10.1145/2382936.2383060","title":"Feature extraction in protein sequences classification","display_name":"Feature extraction in protein sequences classification","publication_year":2012,"publication_date":"2012-10-07","ids":{"openalex":"https://openalex.org/W2001416495","doi":"https://doi.org/10.1145/2382936.2383060","mag":"2001416495"},"language":"en","primary_location":{"id":"doi:10.1145/2382936.2383060","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2382936.2383060","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1206.4822","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031397536","display_name":"Rabie Saidi","orcid":"https://orcid.org/0000-0002-0449-5253"},"institutions":[{"id":"https://openalex.org/I198244214","display_name":"Universit\u00e9 Clermont Auvergne","ror":"https://ror.org/01a8ajp46","country_code":"FR","type":"education","lineage":["https://openalex.org/I198244214"]},{"id":"https://openalex.org/I4210099416","display_name":"Laboratoire d'Informatique, de Mod\u00e9lisation et d'Optimisation des Syst\u00e8mes","ror":"https://ror.org/00t3fpp34","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I198244214","https://openalex.org/I198244214","https://openalex.org/I203339264","https://openalex.org/I205703379","https://openalex.org/I3019848993","https://openalex.org/I4210099416","https://openalex.org/I4210123221","https://openalex.org/I4210159245","https://openalex.org/I4387154249"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Rabie Saidi","raw_affiliation_strings":["LIMOS - UBP - Clermont University, BP, France"],"affiliations":[{"raw_affiliation_string":"LIMOS - UBP - Clermont University, BP, France","institution_ids":["https://openalex.org/I198244214","https://openalex.org/I4210099416"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019200975","display_name":"Sabeur Aridhi","orcid":"https://orcid.org/0000-0002-3657-3762"},"institutions":[{"id":"https://openalex.org/I63596082","display_name":"Tunis El Manar University","ror":"https://ror.org/029cgt552","country_code":"TN","type":"education","lineage":["https://openalex.org/I63596082"]},{"id":"https://openalex.org/I54316950","display_name":"University of Jendouba","ror":"https://ror.org/000g0zm60","country_code":"TN","type":"education","lineage":["https://openalex.org/I54316950"]}],"countries":["TN"],"is_corresponding":false,"raw_author_name":"Sabeur Aridhi","raw_affiliation_strings":["LIMOS - UBP - Clermont University, BP, France and LIPAH - FST - University of Tunis El Manar, Tunisia and FSJ - University of Jendouba, Tunisia","LIMOS - UBP - Clermont University, BP, France and LIPAH - FST - University of Tunis El Manar, Tunisia and FSJ - University of Jendouba, Tunisia#TAB#"],"affiliations":[{"raw_affiliation_string":"LIMOS - UBP - Clermont University, BP, France and LIPAH - FST - University of Tunis El Manar, Tunisia and FSJ - University of Jendouba, Tunisia","institution_ids":["https://openalex.org/I63596082","https://openalex.org/I54316950"]},{"raw_affiliation_string":"LIMOS - UBP - Clermont University, BP, France and LIPAH - FST - University of Tunis El Manar, Tunisia and FSJ - University of Jendouba, Tunisia#TAB#","institution_ids":["https://openalex.org/I63596082","https://openalex.org/I54316950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057686129","display_name":"Engelbert Mephu Nguifo","orcid":"https://orcid.org/0000-0001-9119-678X"},"institutions":[{"id":"https://openalex.org/I4210099416","display_name":"Laboratoire d'Informatique, de Mod\u00e9lisation et d'Optimisation des Syst\u00e8mes","ror":"https://ror.org/00t3fpp34","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I198244214","https://openalex.org/I198244214","https://openalex.org/I203339264","https://openalex.org/I205703379","https://openalex.org/I3019848993","https://openalex.org/I4210099416","https://openalex.org/I4210123221","https://openalex.org/I4210159245","https://openalex.org/I4387154249"]},{"id":"https://openalex.org/I198244214","display_name":"Universit\u00e9 Clermont Auvergne","ror":"https://ror.org/01a8ajp46","country_code":"FR","type":"education","lineage":["https://openalex.org/I198244214"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Engelbert Mephu Nguifo","raw_affiliation_strings":["LIMOS - UBP - Clermont University, BP, France"],"affiliations":[{"raw_affiliation_string":"LIMOS - UBP - Clermont University, BP, France","institution_ids":["https://openalex.org/I198244214","https://openalex.org/I4210099416"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112054681","display_name":"Mondher Maddouri","orcid":null},"institutions":[{"id":"https://openalex.org/I63596082","display_name":"Tunis El Manar University","ror":"https://ror.org/029cgt552","country_code":"TN","type":"education","lineage":["https://openalex.org/I63596082"]},{"id":"https://openalex.org/I108714496","display_name":"Tunis University","ror":"https://ror.org/02q1spa57","country_code":"TN","type":"education","lineage":["https://openalex.org/I108714496"]}],"countries":["TN"],"is_corresponding":false,"raw_author_name":"Mondher Maddouri","raw_affiliation_strings":["LIPAH - FST - University of Tunis El Manar, Tunis, Tunisia","LIPAH - FST - University of Tunis El Manar, Tunis, Tunisia#TAB#"],"affiliations":[{"raw_affiliation_string":"LIPAH - FST - University of Tunis El Manar, Tunis, Tunisia","institution_ids":["https://openalex.org/I63596082"]},{"raw_affiliation_string":"LIPAH - FST - University of Tunis El Manar, Tunis, Tunisia#TAB#","institution_ids":["https://openalex.org/I108714496","https://openalex.org/I63596082"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5031397536"],"corresponding_institution_ids":["https://openalex.org/I198244214","https://openalex.org/I4210099416"],"apc_list":null,"apc_paid":null,"fwci":0.8052,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.70573506,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"683","last_page":"689"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.7343880534172058},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6894775629043579},{"id":"https://openalex.org/keywords/feature-extraction","display_name":"Feature extraction","score":0.6873644590377808},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.685562252998352},{"id":"https://openalex.org/keywords/subsequence","display_name":"Subsequence","score":0.6722453236579895},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5980790853500366},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5907319188117981},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.44510412216186523},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.196804016828537},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08321258425712585}],"concepts":[{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.7343880534172058},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6894775629043579},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.6873644590377808},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.685562252998352},{"id":"https://openalex.org/C137877099","wikidata":"https://www.wikidata.org/wiki/Q1332977","display_name":"Subsequence","level":3,"score":0.6722453236579895},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5980790853500366},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5907319188117981},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44510412216186523},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.196804016828537},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08321258425712585},{"id":"https://openalex.org/C34388435","wikidata":"https://www.wikidata.org/wiki/Q2267362","display_name":"Bounded function","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/2382936.2383060","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2382936.2383060","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:1206.4822","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1206.4822","pdf_url":"https://arxiv.org/pdf/1206.4822","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:HAL:hal-01819547v1","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-01819547","pdf_url":null,"source":{"id":"https://openalex.org/S4406922461","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ACM BCB 2012 - Conference on Bioinformatics, Computational Biology and Biomedicine, Oct 2012, Orlando, United States. &#x27E8;10.1145/2382936.2383060&#x27E9;","raw_type":"Conference papers"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1206.4822","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1206.4822","pdf_url":"https://arxiv.org/pdf/1206.4822","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1378570","https://openalex.org/W140777655","https://openalex.org/W1485545181","https://openalex.org/W1501626351","https://openalex.org/W1570448133","https://openalex.org/W1830081926","https://openalex.org/W1966258773","https://openalex.org/W1978321070","https://openalex.org/W1980608565","https://openalex.org/W2003144438","https://openalex.org/W2020816856","https://openalex.org/W2032909675","https://openalex.org/W2038894244","https://openalex.org/W2059980912","https://openalex.org/W2061402433","https://openalex.org/W2086770662","https://openalex.org/W2090557416","https://openalex.org/W2095390342","https://openalex.org/W2102831150","https://openalex.org/W2110041134","https://openalex.org/W2119387367","https://openalex.org/W2123764626","https://openalex.org/W2137317896","https://openalex.org/W2140190241","https://openalex.org/W2142849726","https://openalex.org/W2143210482","https://openalex.org/W2156647247","https://openalex.org/W2157755551","https://openalex.org/W2158933803","https://openalex.org/W2160540263","https://openalex.org/W2161062388","https://openalex.org/W2165250079","https://openalex.org/W2303394219","https://openalex.org/W2434820933","https://openalex.org/W2966207845","https://openalex.org/W4212865600","https://openalex.org/W4213149192","https://openalex.org/W4241156921"],"related_works":["https://openalex.org/W2996768723","https://openalex.org/W4212895949","https://openalex.org/W4230102134","https://openalex.org/W4247866870","https://openalex.org/W2112772040","https://openalex.org/W3216774880","https://openalex.org/W1996690921","https://openalex.org/W2095030957","https://openalex.org/W2066827917","https://openalex.org/W2952736244"],"abstract_inverted_index":{"Feature":[0],"extraction":[1,89,130,173],"is":[2,32],"an":[3,50],"unavoidable":[4],"task,":[5],"especially":[6],"in":[7,20,122,136,149],"the":[8,22,45,99,106,114,119,126,139,142,150,159],"critical":[9],"step":[10,16],"of":[11,27,96,101,116,118,128,138,141],"preprocessing":[12],"biological":[13,23,176],"sequences.":[14,63,177],"This":[15,64],"consists":[17],"for":[18,91,175],"example":[19],"transforming":[21],"sequences":[24,56],"into":[25],"vectors":[26],"motifs":[28,60,121],"where":[29,53],"each":[30],"motif":[31,129],"a":[33,40],"subsequence":[34],"that":[35],"can":[36,66],"be":[37,67],"seen":[38],"as":[39,81],"property":[41],"(or":[42],"attribute)":[43],"characterizing":[44],"sequence.":[46],"Hence,":[47],"we":[48,112],"obtain":[49],"object-property":[51],"table":[52],"objects":[54],"are":[55,59],"and":[57,153,168],"properties":[58],"extracted":[61],"from":[62],"output":[65],"used":[68],"to":[69,75,124,144,157,166],"apply":[70],"standard":[71],"machine":[72],"learning":[73],"tools":[74],"perform":[76],"data":[77,152],"mining":[78],"tasks":[79],"such":[80],"classification.":[82],"Several":[83],"previous":[84],"works":[85],"have":[86],"described":[87],"feature":[88],"methods":[90,103,174],"bio-sequence":[92],"classification,":[93],"but":[94],"none":[95],"them":[97],"discussed":[98],"robustness":[100,127,135],"these":[102,164],"when":[104],"perturbing":[105],"input":[107,151],"data.":[108],"In":[109],"this":[110,134],"work,":[111],"introduce":[113],"notion":[115],"stability":[117],"generated":[120],"order":[123],"study":[125],"methods.":[131],"We":[132,162],"express":[133],"terms":[137],"ability":[140,156],"method":[143],"reveal":[145],"any":[146],"change":[147],"occurring":[148],"also":[154],"its":[155],"target":[158],"interesting":[160],"motifs.":[161],"use":[163],"criteria":[165],"evaluate":[167],"experimentally":[169],"compare":[170],"four":[171],"existing":[172]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2016-06-24T00:00:00"}
