{"id":"https://openalex.org/W2083768080","doi":"https://doi.org/10.1145/2382936.2383045","title":"Serum antibody repertoire profiling using virtual antigen screen","display_name":"Serum antibody repertoire profiling using virtual antigen screen","publication_year":2012,"publication_date":"2012-10-07","ids":{"openalex":"https://openalex.org/W2083768080","doi":"https://doi.org/10.1145/2382936.2383045","mag":"2083768080"},"language":"en","primary_location":{"id":"doi:10.1145/2382936.2383045","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2382936.2383045","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100757866","display_name":"Xinyue Liu","orcid":"https://orcid.org/0000-0002-2145-1674"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xinyue Liu","raw_affiliation_strings":["University of Maryland School of Medicine, Baltimore, MD"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Maryland School of Medicine, Baltimore, MD","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032805931","display_name":"Luke J. Tallon","orcid":"https://orcid.org/0000-0002-4656-4480"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luke J. Tallon","raw_affiliation_strings":["University of Maryland School of Medicine, Baltimore, MD"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Maryland School of Medicine, Baltimore, MD","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019516927","display_name":"Lisa Sadzewicz","orcid":"https://orcid.org/0000-0002-9651-8992"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lisa Sadzewicz","raw_affiliation_strings":["University of Maryland School of Medicine, Baltimore, MD"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Maryland School of Medicine, Baltimore, MD","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047838779","display_name":"Elena Klyushnenkova","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elena N. Klyushnenkova","raw_affiliation_strings":["University of Maryland School of Medicine, Baltimore, MD"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Maryland School of Medicine, Baltimore, MD","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057897165","display_name":"Yurij Ionov","orcid":"https://orcid.org/0000-0002-7174-386X"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yurij Ionov","raw_affiliation_strings":["Roswell Park Cancer Institute, Buffalo, NY"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Roswell Park Cancer Institute, Buffalo, NY","institution_ids":["https://openalex.org/I1292894508"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"623","last_page":"624"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/repertoire","display_name":"Repertoire","score":0.7941449880599976},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.70164555311203},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.6921671032905579},{"id":"https://openalex.org/keywords/antibody-repertoire","display_name":"Antibody Repertoire","score":0.5675024390220642},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.5340790748596191},{"id":"https://openalex.org/keywords/phage-display","display_name":"Phage display","score":0.5227546691894531},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48796600103378296},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.39843183755874634},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3572210371494293},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.32201796770095825}],"concepts":[{"id":"https://openalex.org/C2778473898","wikidata":"https://www.wikidata.org/wiki/Q2145110","display_name":"Repertoire","level":2,"score":0.7941449880599976},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.70164555311203},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.6921671032905579},{"id":"https://openalex.org/C2910693471","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody Repertoire","level":3,"score":0.5675024390220642},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.5340790748596191},{"id":"https://openalex.org/C186268636","wikidata":"https://www.wikidata.org/wiki/Q896217","display_name":"Phage display","level":3,"score":0.5227546691894531},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48796600103378296},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.39843183755874634},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3572210371494293},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.32201796770095825},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2382936.2383045","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2382936.2383045","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W1983013313","https://openalex.org/W2013074264","https://openalex.org/W2101156894","https://openalex.org/W2102190387","https://openalex.org/W2128752057","https://openalex.org/W2136795185"],"related_works":["https://openalex.org/W2581256546","https://openalex.org/W2053091829","https://openalex.org/W4323236833","https://openalex.org/W2780245662","https://openalex.org/W179764517","https://openalex.org/W2616207459","https://openalex.org/W3008570337","https://openalex.org/W1933308802","https://openalex.org/W2055685841","https://openalex.org/W2982183030"],"abstract_inverted_index":{"We":[0,67],"propose":[1],"an":[2],"algorithm":[3,30],"for":[4,24,94],"deciphering":[5],"the":[6,72,75,81,88,91],"repertoire":[7],"of":[8,16,90],"serum":[9,27,39,96],"antibodies":[10,40],"using":[11],"next":[12],"generation":[13],"sequencing":[14],"(NextGenSeq)":[15],"random":[17],"peptide":[18],"phage":[19],"display":[20],"libraries":[21],"(RPPDL)":[22],"selected":[23],"binding":[25],"to":[26,33,46,70],"antibodies.":[28],"The":[29],"is":[31],"aimed":[32],"distinguish":[34],"real":[35],"antigens":[36,78],"recognized":[37],"by":[38,80],"from":[41,55],"irrelevant":[42],"proteins":[43],"retrieved":[44,79],"due":[45],"a":[47,59],"chance.":[48],"Using":[49],"this":[50],"method":[51,93],"we":[52],"analyzed":[53],"sera":[54],"mice":[56],"immunized":[57],"with":[58],"known":[60],"human":[61],"protein,":[62],"Prostatic":[63],"Acid":[64],"Phosphatase":[65],"(PAP).":[66],"were":[68],"able":[69],"identify":[71],"PAP":[73],"among":[74],"top":[76],"candidate":[77],"BLAST":[82],"database":[83],"search.":[84],"Our":[85],"data":[86],"demonstrate":[87],"feasibility":[89],"proposed":[92],"profiling":[95],"antibody":[97],"repertoires.":[98]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
