{"id":"https://openalex.org/W2088025175","doi":"https://doi.org/10.1145/2382936.2383043","title":"Random-walk","display_name":"Random-walk","publication_year":2012,"publication_date":"2012-10-07","ids":{"openalex":"https://openalex.org/W2088025175","doi":"https://doi.org/10.1145/2382936.2383043","mag":"2088025175"},"language":"en","primary_location":{"id":"doi:10.1145/2382936.2383043","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2382936.2383043","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086125031","display_name":"Mahmood A. Rashid","orcid":"https://orcid.org/0000-0003-3347-2381"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Mahmood A. Rashid","raw_affiliation_strings":["Queensland Research Laboratory, NICTA and Griffith University","Queensland Research Laboratory, NICTA and Griffith University#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Queensland Research Laboratory, NICTA and Griffith University","institution_ids":["https://openalex.org/I11701301","https://openalex.org/I42894916"]},{"raw_affiliation_string":"Queensland Research Laboratory, NICTA and Griffith University#TAB#","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067504579","display_name":"Swakkhar Shatabda","orcid":"https://orcid.org/0000-0003-0669-072X"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Swakkhar Shatabda","raw_affiliation_strings":["Queensland Research Laboratory, NICTA and Griffith University","Queensland Research Laboratory, NICTA and Griffith University#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Queensland Research Laboratory, NICTA and Griffith University","institution_ids":["https://openalex.org/I11701301","https://openalex.org/I42894916"]},{"raw_affiliation_string":"Queensland Research Laboratory, NICTA and Griffith University#TAB#","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086354302","display_name":"M. A. Hakim Newton","orcid":"https://orcid.org/0000-0001-5655-0683"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"M. A. Hakim Newton","raw_affiliation_strings":["Queensland Research Laboratory, NICTA and Griffith University","Queensland Research Laboratory, NICTA and Griffith University#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Queensland Research Laboratory, NICTA and Griffith University","institution_ids":["https://openalex.org/I11701301","https://openalex.org/I42894916"]},{"raw_affiliation_string":"Queensland Research Laboratory, NICTA and Griffith University#TAB#","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055092646","display_name":"Md Tamjidul Hoque","orcid":"https://orcid.org/0000-0002-0110-2194"},"institutions":[{"id":"https://openalex.org/I192396691","display_name":"University of New Orleans","ror":"https://ror.org/034mtvk83","country_code":"US","type":"education","lineage":["https://openalex.org/I192396691","https://openalex.org/I2799628689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Md Tamjidul Hoque","raw_affiliation_strings":["University of New Orleans"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of New Orleans","institution_ids":["https://openalex.org/I192396691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033848427","display_name":"Duc Nghia Pham","orcid":"https://orcid.org/0009-0001-8985-017X"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Duc Nghia Pham","raw_affiliation_strings":["Queensland Research Laboratory, NICTA and Griffith University","Queensland Research Laboratory, NICTA and Griffith University#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Queensland Research Laboratory, NICTA and Griffith University","institution_ids":["https://openalex.org/I11701301","https://openalex.org/I42894916"]},{"raw_affiliation_string":"Queensland Research Laboratory, NICTA and Griffith University#TAB#","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038675407","display_name":"Abdul Sattar","orcid":"https://orcid.org/0000-0002-2567-2052"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Abdul Sattar","raw_affiliation_strings":["Queensland Research Laboratory, NICTA and Griffith University","Queensland Research Laboratory, NICTA and Griffith University#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Queensland Research Laboratory, NICTA and Griffith University","institution_ids":["https://openalex.org/I11701301","https://openalex.org/I42894916"]},{"raw_affiliation_string":"Queensland Research Laboratory, NICTA and Griffith University#TAB#","institution_ids":["https://openalex.org/I11701301"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"620","last_page":"622"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/maxima-and-minima","display_name":"Maxima and minima","score":0.848190426826477},{"id":"https://openalex.org/keywords/random-walk","display_name":"Random walk","score":0.8058452010154724},{"id":"https://openalex.org/keywords/tabu-search","display_name":"Tabu search","score":0.6814491748809814},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5815764665603638},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4981234073638916},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.48480597138404846},{"id":"https://openalex.org/keywords/hill-climbing","display_name":"Hill climbing","score":0.4831516146659851},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.46278244256973267},{"id":"https://openalex.org/keywords/local-search","display_name":"Local search (optimization)","score":0.44175979495048523},{"id":"https://openalex.org/keywords/lattice","display_name":"Lattice (music)","score":0.43715205788612366},{"id":"https://openalex.org/keywords/face","display_name":"Face (sociological concept)","score":0.42713022232055664},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.42190372943878174},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.41457709670066833},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3232613801956177},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.24948260188102722},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.16972026228904724},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.09516113996505737},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.09008032083511353}],"concepts":[{"id":"https://openalex.org/C186633575","wikidata":"https://www.wikidata.org/wiki/Q845060","display_name":"Maxima and minima","level":2,"score":0.848190426826477},{"id":"https://openalex.org/C121194460","wikidata":"https://www.wikidata.org/wiki/Q856741","display_name":"Random walk","level":2,"score":0.8058452010154724},{"id":"https://openalex.org/C123370116","wikidata":"https://www.wikidata.org/wiki/Q1424540","display_name":"Tabu search","level":2,"score":0.6814491748809814},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5815764665603638},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4981234073638916},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.48480597138404846},{"id":"https://openalex.org/C135450995","wikidata":"https://www.wikidata.org/wiki/Q820272","display_name":"Hill climbing","level":2,"score":0.4831516146659851},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.46278244256973267},{"id":"https://openalex.org/C135320971","wikidata":"https://www.wikidata.org/wiki/Q1868524","display_name":"Local search (optimization)","level":2,"score":0.44175979495048523},{"id":"https://openalex.org/C2781204021","wikidata":"https://www.wikidata.org/wiki/Q6497091","display_name":"Lattice (music)","level":2,"score":0.43715205788612366},{"id":"https://openalex.org/C2779304628","wikidata":"https://www.wikidata.org/wiki/Q3503480","display_name":"Face (sociological concept)","level":2,"score":0.42713022232055664},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.42190372943878174},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.41457709670066833},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3232613801956177},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.24948260188102722},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.16972026228904724},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.09516113996505737},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.09008032083511353},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/2382936.2383043","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2382936.2383043","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/49839","is_oa":false,"landing_page_url":"http://hdl.handle.net/10072/49839","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Conference output"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7799999713897705,"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W113688923","https://openalex.org/W1973897761","https://openalex.org/W2045777307","https://openalex.org/W2080382112","https://openalex.org/W2129469300","https://openalex.org/W2137105118","https://openalex.org/W2154811699","https://openalex.org/W2159130720","https://openalex.org/W2329627532","https://openalex.org/W2611927968","https://openalex.org/W4233044915","https://openalex.org/W6604582531"],"related_works":["https://openalex.org/W2476121495","https://openalex.org/W1232705","https://openalex.org/W2053571861","https://openalex.org/W2061323558","https://openalex.org/W2038822609","https://openalex.org/W2391241553","https://openalex.org/W2159875846","https://openalex.org/W2391196821","https://openalex.org/W1533229056","https://openalex.org/W2726888863"],"abstract_inverted_index":{"Protein":[0],"structure":[1,96],"prediction":[2,97],"is":[3,86],"a":[4,59],"challenging":[5],"optimisation":[6],"problem":[7,24],"to":[8,21],"the":[9,23,31],"computer":[10],"scientists.":[11],"A":[12],"large":[13,51],"number":[14],"of":[15],"existing":[16],"(meta-)heuristic":[17],"search":[18,72],"algorithms":[19,39],"attempt":[20],"solve":[22],"by":[25],"exploring":[26],"possible":[27],"structures":[28],"and":[29,46,101],"finding":[30],"one":[32],"with":[33],"minimum":[34],"free":[35],"energy.":[36],"However,":[37],"these":[38],"often":[40],"get":[41],"stuck":[42],"in":[43],"local":[44,71,92],"minima":[45,93],"thus":[47],"perform":[48],"poorly":[49],"on":[50,69,98],"sized":[52],"proteins.":[53],"In":[54],"this":[55],"paper,":[56],"we":[57],"present":[58],"random-walk":[60,85],"based":[61,77],"stagnation":[62],"recovery":[63],"approach.":[64],"We":[65],"tested":[66],"our":[67],"approach":[68],"tabu-based":[70],"as":[73,75],"well":[74],"population":[76],"genetic":[78],"algorithms.":[79],"The":[80],"experimental":[81],"results":[82],"show":[83],"that,":[84],"very":[87],"effective":[88],"for":[89,94],"escaping":[90],"from":[91],"protein":[95],"face-centred-cubic":[99],"lattice":[100],"hydrophobic-polar":[102],"energy":[103],"model.":[104]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2016-06-24T00:00:00"}
