{"id":"https://openalex.org/W2028340080","doi":"https://doi.org/10.1145/2382936.2383022","title":"Prediction of candidate genes for neuropsychiatric disorders using feature-based enrichment","display_name":"Prediction of candidate genes for neuropsychiatric disorders using feature-based enrichment","publication_year":2012,"publication_date":"2012-10-07","ids":{"openalex":"https://openalex.org/W2028340080","doi":"https://doi.org/10.1145/2382936.2383022","mag":"2028340080"},"language":"en","primary_location":{"id":"doi:10.1145/2382936.2383022","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2382936.2383022","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022846227","display_name":"Bingqing Xie","orcid":"https://orcid.org/0000-0001-9246-9321"},"institutions":[{"id":"https://openalex.org/I180949307","display_name":"Illinois Institute of Technology","ror":"https://ror.org/037t3ry66","country_code":"US","type":"education","lineage":["https://openalex.org/I180949307"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Bingqing Xie","raw_affiliation_strings":["Illinois Institute of Technology, Chicago, IL",", Illinois Institute of Technology, Chicago, IL"],"affiliations":[{"raw_affiliation_string":"Illinois Institute of Technology, Chicago, IL","institution_ids":["https://openalex.org/I180949307"]},{"raw_affiliation_string":", Illinois Institute of Technology, Chicago, IL","institution_ids":["https://openalex.org/I180949307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023698748","display_name":"Gady Agam","orcid":null},"institutions":[{"id":"https://openalex.org/I180949307","display_name":"Illinois Institute of Technology","ror":"https://ror.org/037t3ry66","country_code":"US","type":"education","lineage":["https://openalex.org/I180949307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gady Agam","raw_affiliation_strings":["Illinois Institute of Technology, Chicago, IL",", Illinois Institute of Technology, Chicago, IL"],"affiliations":[{"raw_affiliation_string":"Illinois Institute of Technology, Chicago, IL","institution_ids":["https://openalex.org/I180949307"]},{"raw_affiliation_string":", Illinois Institute of Technology, Chicago, IL","institution_ids":["https://openalex.org/I180949307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075004675","display_name":"Dinanath Sulakhe","orcid":"https://orcid.org/0000-0002-4680-1212"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dinanath Sulakhe","raw_affiliation_strings":["The University of Chicago, Chicago, IL","The University of Chicago, Chicago IL"],"affiliations":[{"raw_affiliation_string":"The University of Chicago, Chicago, IL","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"The University of Chicago, Chicago IL","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039190520","display_name":"Natalia Maltsev","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Natalia Maltsev","raw_affiliation_strings":["The University of Chicago, Chicago, IL","The University of Chicago, Chicago IL"],"affiliations":[{"raw_affiliation_string":"The University of Chicago, Chicago, IL","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"The University of Chicago, Chicago IL","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091758089","display_name":"Bhadrachalam Chitturi","orcid":"https://orcid.org/0000-0002-8768-9183"},"institutions":[{"id":"https://openalex.org/I81556334","display_name":"Amrita Vishwa Vidyapeetham","ror":"https://ror.org/03am10p12","country_code":"IN","type":"education","lineage":["https://openalex.org/I81556334"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Bhadrachalam Chitturi","raw_affiliation_strings":["Amrita University, Kerala, India","Amrita University, Kerala, India#TAB#"],"affiliations":[{"raw_affiliation_string":"Amrita University, Kerala, India","institution_ids":["https://openalex.org/I81556334"]},{"raw_affiliation_string":"Amrita University, Kerala, India#TAB#","institution_ids":["https://openalex.org/I81556334"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035081543","display_name":"T. Conrad Gilliam","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T. Conrad Gilliam","raw_affiliation_strings":["The University of Chicago, Chicago, IL","The University of Chicago, Chicago IL"],"affiliations":[{"raw_affiliation_string":"The University of Chicago, Chicago, IL","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"The University of Chicago, Chicago IL","institution_ids":["https://openalex.org/I40347166"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5022846227"],"corresponding_institution_ids":["https://openalex.org/I180949307"],"apc_list":null,"apc_paid":null,"fwci":0.6567,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.6738473,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"564","last_page":"566"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/candidate-gene","display_name":"Candidate gene","score":0.5824956893920898},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5647619962692261},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.558593213558197},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.4424774646759033},{"id":"https://openalex.org/keywords/autism","display_name":"Autism","score":0.4354904890060425},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4188617169857025},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.39111703634262085},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33709847927093506},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30599820613861084},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3057110905647278},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.08843088150024414}],"concepts":[{"id":"https://openalex.org/C69991583","wikidata":"https://www.wikidata.org/wiki/Q1423575","display_name":"Candidate gene","level":3,"score":0.5824956893920898},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5647619962692261},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.558593213558197},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.4424774646759033},{"id":"https://openalex.org/C205778803","wikidata":"https://www.wikidata.org/wiki/Q38404","display_name":"Autism","level":2,"score":0.4354904890060425},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4188617169857025},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.39111703634262085},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33709847927093506},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30599820613861084},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3057110905647278},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.08843088150024414},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2382936.2383022","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2382936.2383022","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1605637875","https://openalex.org/W1999318832","https://openalex.org/W2023116290","https://openalex.org/W2032755318","https://openalex.org/W2099656145","https://openalex.org/W2109555487","https://openalex.org/W2114381883","https://openalex.org/W2119821739","https://openalex.org/W2132056568","https://openalex.org/W2153635508","https://openalex.org/W2170866859"],"related_works":["https://openalex.org/W4280602684","https://openalex.org/W4310092953","https://openalex.org/W2227393071","https://openalex.org/W4402326599","https://openalex.org/W1995350144","https://openalex.org/W2082102603","https://openalex.org/W2166141227","https://openalex.org/W3133980636","https://openalex.org/W4378085486","https://openalex.org/W4366602711"],"abstract_inverted_index":{"The":[0],"progress":[1],"in":[2,45,119,138],"understanding":[3],"of":[4,19,25,34,47,66,71,79,113,123,135,145,170,179],"molecular":[5],"mechanisms":[6],"underlying":[7],"common":[8],"heritable":[9],"disorders":[10,173],"(e.g.":[11,39,142],"autism,":[12],"schizophrenia,":[13],"diabetes)":[14],"depends":[15],"on":[16,151],"the":[17,56,67,136,139,143,155,164,168],"availability":[18],"new":[20],"bioinformatics":[21],"approaches":[22],"for":[23,77],"identification":[24],"their":[26],"characteristic":[27],"genetic":[28],"variations":[29],"and":[30,54,88,97,125,177],"associated":[31],"multidimensional":[32],"patterns":[33],"inheritance.":[35],"High-throughput":[36],"genome-wide":[37],"studies":[38],"sequencing,":[40],"gene":[41,146],"expression":[42,147],"profiling)":[43],"result":[44],"hundreds":[46],"potential":[48],"candidate":[49,81],"genes.":[50],"Prioritizing":[51],"these":[52,127],"genes":[53,82,124,137],"finding":[55],"best":[57],"candidates":[58],"contributing":[59],"to":[60,116,128,158,167],"a":[61,111,120,130,152],"disease":[62,80],"phenotype":[63],"is":[64,149],"one":[65],"most":[68],"important":[69],"problems":[70],"genomics.":[72],"We":[73,109],"present":[74],"an":[75],"approach":[76,166],"prioritization":[78],"using":[83,132,163],"Support":[84],"Vector":[85],"Machine":[86],"(SVM)":[87],"ontology":[89,99],"associations.":[90],"Features":[91],"are":[92,182],"extracted":[93],"from":[94,154],"both":[95],"hierarchical":[96],"non-hierarchical":[98],"space":[100],"(e.g":[101],"user":[102],"defined":[103],"customized":[104],"ontologies,":[105],"Gene":[106],"Ontology(GO)":[107],").":[108],"select":[110],"subset":[112],"features":[114],"according":[115],"enrichment":[117],"scores":[118],"training":[121],"set":[122,141],"use":[126],"train":[129],"classifier":[131],"SVM.":[133],"Ranking":[134],"query":[140],"results":[144],"analysis)":[148],"based":[150],"distance":[153],"decision":[156],"boundary":[157],"data":[159],"points.":[160],"Results":[161],"obtained":[162],"proposed":[165],"analysis":[169],"several":[171],"neurological":[172],"(autism,":[174],"mental":[175],"retardation,":[176],"agenesis":[178],"corpus":[180],"callosum)":[181],"presented.":[183]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
