{"id":"https://openalex.org/W2061396726","doi":"https://doi.org/10.1145/2382936.2383019","title":"Copy number variation estimation from multiple next-generation sequencing samples","display_name":"Copy number variation estimation from multiple next-generation sequencing samples","publication_year":2012,"publication_date":"2012-10-07","ids":{"openalex":"https://openalex.org/W2061396726","doi":"https://doi.org/10.1145/2382936.2383019","mag":"2061396726"},"language":"en","primary_location":{"id":"doi:10.1145/2382936.2383019","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2382936.2383019","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023726254","display_name":"Junbo Duan","orcid":"https://orcid.org/0000-0001-7170-3772"},"institutions":[{"id":"https://openalex.org/I114832834","display_name":"Tulane University","ror":"https://ror.org/04vmvtb21","country_code":"US","type":"education","lineage":["https://openalex.org/I114832834"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Junbo Duan","raw_affiliation_strings":["Tulane University, New Orleans","Tulane University New Orleans,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tulane University, New Orleans","institution_ids":["https://openalex.org/I114832834"]},{"raw_affiliation_string":"Tulane University New Orleans,","institution_ids":["https://openalex.org/I114832834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101811852","display_name":"Jigang Zhang","orcid":"https://orcid.org/0000-0003-4389-449X"},"institutions":[{"id":"https://openalex.org/I114832834","display_name":"Tulane University","ror":"https://ror.org/04vmvtb21","country_code":"US","type":"education","lineage":["https://openalex.org/I114832834"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ji-Gang Zhang","raw_affiliation_strings":["Tulane University, New Orleans","Tulane University New Orleans,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tulane University, New Orleans","institution_ids":["https://openalex.org/I114832834"]},{"raw_affiliation_string":"Tulane University New Orleans,","institution_ids":["https://openalex.org/I114832834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079946688","display_name":"Hongbao Cao","orcid":"https://orcid.org/0000-0001-6591-9518"},"institutions":[{"id":"https://openalex.org/I114832834","display_name":"Tulane University","ror":"https://ror.org/04vmvtb21","country_code":"US","type":"education","lineage":["https://openalex.org/I114832834"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongbao Cao","raw_affiliation_strings":["Tulane University, New Orleans","Tulane University New Orleans,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tulane University, New Orleans","institution_ids":["https://openalex.org/I114832834"]},{"raw_affiliation_string":"Tulane University New Orleans,","institution_ids":["https://openalex.org/I114832834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024194480","display_name":"Hong\u2010Wen Deng","orcid":"https://orcid.org/0000-0002-0387-8818"},"institutions":[{"id":"https://openalex.org/I114832834","display_name":"Tulane University","ror":"https://ror.org/04vmvtb21","country_code":"US","type":"education","lineage":["https://openalex.org/I114832834"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hong-Wen Deng","raw_affiliation_strings":["Tulane University, New Orleans","Tulane University New Orleans,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tulane University, New Orleans","institution_ids":["https://openalex.org/I114832834"]},{"raw_affiliation_string":"Tulane University New Orleans,","institution_ids":["https://openalex.org/I114832834"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100339106","display_name":"Yu\u2010Ping Wang","orcid":"https://orcid.org/0000-0001-9340-5864"},"institutions":[{"id":"https://openalex.org/I114832834","display_name":"Tulane University","ror":"https://ror.org/04vmvtb21","country_code":"US","type":"education","lineage":["https://openalex.org/I114832834"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yu-Ping Wang","raw_affiliation_strings":["Tulane University, New Orleans","Tulane University New Orleans,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tulane University, New Orleans","institution_ids":["https://openalex.org/I114832834"]},{"raw_affiliation_string":"Tulane University New Orleans,","institution_ids":["https://openalex.org/I114832834"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11110211,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"555","last_page":"557"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/copy-number-variation","display_name":"Copy-number variation","score":0.7487558126449585},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.687457263469696},{"id":"https://openalex.org/keywords/concurrency","display_name":"Concurrency","score":0.4390118420124054},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.4195685386657715},{"id":"https://openalex.org/keywords/variation","display_name":"Variation (astronomy)","score":0.4139353930950165},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34324777126312256},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10350358486175537},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08735254406929016},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.0724990963935852},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06795191764831543}],"concepts":[{"id":"https://openalex.org/C120821319","wikidata":"https://www.wikidata.org/wiki/Q1501491","display_name":"Copy-number variation","level":4,"score":0.7487558126449585},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.687457263469696},{"id":"https://openalex.org/C193702766","wikidata":"https://www.wikidata.org/wiki/Q1414548","display_name":"Concurrency","level":2,"score":0.4390118420124054},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.4195685386657715},{"id":"https://openalex.org/C2778334786","wikidata":"https://www.wikidata.org/wiki/Q1586270","display_name":"Variation (astronomy)","level":2,"score":0.4139353930950165},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34324777126312256},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10350358486175537},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08735254406929016},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.0724990963935852},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06795191764831543},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C44870925","wikidata":"https://www.wikidata.org/wiki/Q37547","display_name":"Astrophysics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2382936.2383019","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2382936.2383019","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1975924842","https://openalex.org/W2012016911","https://openalex.org/W2035593347","https://openalex.org/W2049491159","https://openalex.org/W2090144921","https://openalex.org/W2108234281","https://openalex.org/W2123107972","https://openalex.org/W2137779717","https://openalex.org/W2142635246","https://openalex.org/W2150506261","https://openalex.org/W2168175751","https://openalex.org/W2171534739","https://openalex.org/W2891761813"],"related_works":["https://openalex.org/W2386430105","https://openalex.org/W2356521405","https://openalex.org/W2038534795","https://openalex.org/W2384358604","https://openalex.org/W1567829292","https://openalex.org/W2513883126","https://openalex.org/W3001063351","https://openalex.org/W3196905815","https://openalex.org/W2351370765","https://openalex.org/W3118014344"],"abstract_inverted_index":{"Robust":[0],"and":[1,39],"accurate":[2],"detection":[3,49,83,100],"of":[4,17,21,72],"copy":[5],"number":[6],"variations":[7],"(CNVs)":[8],"from":[9,45,61],"next-generation":[10],"sequencing":[11],"(NGS)":[12],"data":[13,32,89],"is":[14,64],"challenging.":[15],"Because":[16],"the":[18,48,70,82,93,98],"high":[19,35],"fluctuation":[20],"read":[22,73],"depth":[23,74],"signal,":[24],"most":[25],"existing":[26,103],"methods,":[27],"which":[28],"use":[29],"only":[30],"one":[31],"sample,":[33],"yield":[34],"false":[36],"positive":[37],"rate":[38],"low":[40],"power.":[41,84],"By":[42],"integrating":[43],"information":[44],"multiple":[46,62,77],"samples,":[47,78],"could":[50],"be":[51],"improved.":[52],"In":[53],"this":[54],"paper,":[55],"a":[56],"method":[57,68,95],"to":[58,80],"detect":[59],"CNVs":[60],"samples":[63],"proposed.":[65],"The":[66],"proposed":[67,94],"explores":[69],"concurrency":[71],"signals":[75],"across":[76],"promising":[79],"increase":[81],"Our":[85],"experiments":[86],"on":[87],"real":[88],"sets":[90],"show":[91],"that":[92],"can":[96],"improve":[97],"CNV":[99],"over":[101],"several":[102],"ones.":[104]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
